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COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:12.8TPM
GTEx:5.2RPKM
FANTOM5:13.0Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Not detected
Glandular cells:Medium
Peripheral nerve/ganglion:Not detected
 

Antibody staining

Antibody HPA019052

  

Antibody HPA019364

  

Antibody HPA019365

  

Endothelial cells

 Low   Not detected   Medium  

Glandular cells

 Medium   Medium   High  

Peripheral nerve/ganglion

 Not detected   Not detected   Medium  
     
     
     

COLON - HPA RNA-seq

Average TPM

12.8
overview Male, age 54
Sample 1
TPM: 8.8
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57
Sample 2
TPM: 10.5
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80
Sample 3
TPM: 9.9
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68
Sample 4
TPM: 21.1
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68
Sample 5
TPM: 9.7
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61
Sample 6
TPM: 14.7
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80
Sample 7
TPM: 13.7
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78
Sample 8
TPM: 13.2
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84
Sample 9
TPM: 11.5
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80
Sample 10
TPM: 19.4
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78
Sample 11
TPM: 10.0
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69
Sample 12
TPM: 13.9
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72
Sample 13
TPM: 10.3
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

5.2

GTEx sample id

RPKM
3.13.64.01.85.30.00.51.01.52.02.53.03.54.04.55.0
 
3.13.64.01.85.30.00.51.01.52.02.53.03.54.04.55.0

Colon - Sigmoid
Colon - Sigmoid
RPKM: 3.5
Samples: 149

Max RPKM: 5.3
Min RPKM: 1.6
Std RPKM: 0.6
Median RPKM: 3.6
GTEX-131XG-1526-SM-5GCNQ 5.3
GTEX-YEC3-2026-SM-4WWFL 5.3
GTEX-WYVS-1126-SM-4SOJX 5.0
GTEX-146FH-2426-SM-5Q5EW 4.8
GTEX-14E6E-1726-SM-5S2R6 4.7
GTEX-XV7Q-2226-SM-4BRVY 4.7
GTEX-11GS4-1826-SM-5HL4T 4.6
GTEX-13G51-2126-SM-5IJD9 4.6
Show all
4.26.18.10.813.802468101214161820
 
4.26.18.10.813.802468101214161820

Colon - Transverse
Colon - Transverse
RPKM: 6.4
Samples: 196

Max RPKM: 20.7
Min RPKM: 0.8
Std RPKM: 2.8
Median RPKM: 6.1
GTEX-ZV7C-1526-SM-5NQ72 20.7
GTEX-132AR-2726-SM-5PNVN 16.7
GTEX-145MN-1726-SM-5SIA6 16.1
GTEX-13D11-0826-SM-5KLZJ 14.4
GTEX-WFON-1426-SM-4LVMT 13.8
GTEX-UJMC-1326-SM-4IHLS 12.7
GTEX-133LE-1526-SM-5IFEN 12.1
GTEX-131XE-0826-SM-5HL9W 11.9
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

13.0

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 13.0
FF:10014-101C5 62,83,84 years, mixed 13.0

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.