We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
Fields »
 

Field

Term
Gene name

Class

Subclass

Chromosome

External id

In atlas

Reliability

Reliability

Reliability

Validation

Method

Validation

Method

Validation

Method

Validation

Location

Searches

Tissue

Cell type

Expression

Tissue

Specificity

Cell line

Specificity

Tissue

Detectable

Cell line

Detectable

Category

Score

Score

Score

Antibodies

Column

 
 
ABOUT
HELP
BLOG
  • THE HUMAN PROTEOME
  • THE HUMAN TISSUES
  • THE HUMAN CELL
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
    • NEWS
    • BLOG
    • EVENTS
    • PRESS ROOM
    • LEARN
    • DICTIONARY
    • METHODS
    • CELL LINES
  • THE PROJECT
  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS
  • PUBLICATION DATA
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • LINKS
  • CONTACT
  • TECHNICAL DATA
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • DOWNLOADABLE DATA
  • HELP & FAQ
  • LICENCE & CITATION
  • PRIVACY STATEMENT
  • RELEASE HISTORY
ABCF2
  • premium

    TISSUE

  • premium

    CELL

  • CANCER

TISSUE ATLAS PRIMARY DATA SMALL INTESTINE

GENE/PROTEIN

Antibody validation


Dictionary

Small intestine

Tissue proteome

Small intestine

SMALL INTESTINE - Expression summary

Protein expression

h
m
l
n

RNA expression

HPA:13.5TPM
GTEx:10.0RPKM
FANTOM5:19.8Tags Per Million

SMALL INTESTINE - Annotated protein expression

Annotated protein
expression

Glandular cells:Low
 

Antibody staining

Antibody HPA020091

 

Antibody HPA021815

 

Antibody HPA030388

 

Antibody CAB020682

 

Glandular cells

High   High   Low   Medium  
       
       
       

SMALL INTESTINE - HPA RNA-seq

Average TPM

13.5

overview Male, age 65
Sample 1
TPM: 11.3
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 39
Sample 2
TPM: 16.2
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 68
Sample 3
TPM: 12.8
Cell types%
Glandular cells: 30
Smooth muscle cells: 15
Other cell types: 55
N/A Male, age 85
Sample 4
TPM: 13.8

SMALL INTESTINE - GTEx RNA-seq

Average RPKM

10.0

GTEx sample id

RPKM

 

Small Intestine - Terminal Ileum

Small Intestine - Terminal Ileum
RPKM: 10.0
Samples: 88

Max RPKM: 18.7
Min RPKM: 4.2
Std RPKM: 2.6
Median RPKM: 9.5
GTEX-UPK5-2026-SM-4JBIM 18.7
GTEX-WFG8-1626-SM-4LVMB 16.9
GTEX-111CU-1326-SM-5NQ8L 16.7
GTEX-ZQUD-0926-SM-57WE3 15.2
GTEX-X15G-1426-SM-4PQZK 14.8
GTEX-117YX-0326-SM-5GICL 14.5
GTEX-131XG-1726-SM-5LZUR 14.5
GTEX-WEY5-1526-SM-4LMJF 14.2
GTEX-Y5LM-1626-SM-4VDTB 13.8
GTEX-11NSD-1726-SM-5N9C3 13.5
GTEX-XXEK-1026-SM-4BRUW 13.5
GTEX-VUSG-1726-SM-4KKZL 12.9
GTEX-145ME-0926-SM-5O9AR 12.9
GTEX-Z9EW-0926-SM-5CVMM 12.8
GTEX-11P82-0826-SM-5P9GU 12.5
GTEX-13111-1426-SM-5DUW3 12.3
GTEX-1399U-2126-SM-5IFEZ 11.6
GTEX-WFJO-0926-SM-4LVM2 11.5
GTEX-WH7G-1626-SM-4LVMY 11.2
GTEX-ZEX8-1826-SM-57WBH 11.2
GTEX-13O61-1326-SM-5KM31 11.1
GTEX-ZF2S-1726-SM-57WFT 11.0
GTEX-Y114-1426-SM-4TT6W 10.9
GTEX-148VJ-2226-SM-5NQ9M 10.9
GTEX-ZVP2-1726-SM-5GU5P 10.9
GTEX-XAJ8-0526-SM-47JYK 10.9
GTEX-11XUK-1426-SM-5EQMG 10.8
GTEX-11VI4-1626-SM-5EQKO 10.8
GTEX-Y3IK-1726-SM-4YCCR 10.8
GTEX-WFG7-1726-SM-4LVME 10.7
GTEX-ZTPG-2626-SM-57WFX 10.7
GTEX-ZQG8-2526-SM-57WEQ 10.6
GTEX-ZLFU-1526-SM-4WWBT 10.5
GTEX-ZVT2-2126-SM-5NQ93 10.4
GTEX-ZP4G-1626-SM-57WGD 10.4
GTEX-1192X-2526-SM-59868 10.3
GTEX-ZC5H-2326-SM-4WAYT 10.3
GTEX-13QBU-1926-SM-5IJEW 10.2
GTEX-139YR-2226-SM-5IFFW 10.1
GTEX-12BJ1-1926-SM-5HL9Z 10.0
GTEX-XGQ4-1326-SM-4GIDU 9.9
GTEX-11EQ9-1326-SM-5985X 9.8
GTEX-ZPIC-2326-SM-57WDW 9.6
GTEX-14E6E-1626-SM-5RQI7 9.5
GTEX-13RTK-0826-SM-5Q5C6 9.4
GTEX-13113-1226-SM-5EGHT 9.3
GTEX-ZYWO-1526-SM-5SIAL 9.3
GTEX-12WSK-1526-SM-5CVNO 9.2
GTEX-XUZC-1426-SM-4BRV3 9.2
GTEX-WQUQ-2426-SM-4MVNW 9.1
GTEX-XBED-1426-SM-4AT4G 9.1
GTEX-139T6-1026-SM-5IJGC 9.0
GTEX-13OVI-1926-SM-5IJCG 8.9
GTEX-WRHK-1026-SM-4MVOD 8.9
GTEX-XMK1-1826-SM-4B66F 8.9
GTEX-13FH7-1226-SM-5IJFK 8.8
GTEX-131XF-1326-SM-5GCMQ 8.8
GTEX-ZZ64-0526-SM-5GZXM 8.7
GTEX-11P7K-1626-SM-5GU63 8.5
GTEX-ZLV1-1126-SM-4WWBW 8.5
GTEX-ZYFG-2026-SM-5E43Y 8.4
GTEX-14DAR-1426-SM-5RQIR 8.4
GTEX-ZTSS-0926-SM-59865 8.4
GTEX-133LE-1426-SM-5IFH1 8.3
GTEX-ZVZP-1826-SM-5GZXB 8.2
GTEX-1399S-2026-SM-5KM4B 8.2
GTEX-11I78-1126-SM-5A5K5 8.1
GTEX-1399R-2026-SM-5K7WN 8.0
GTEX-145LT-1026-SM-5LU9O 7.9
GTEX-ZTX8-0526-SM-59HLD 7.8
GTEX-ZA64-1226-SM-5HL7B 7.7
GTEX-13D11-0726-SM-5LZZB 7.7
GTEX-VJYA-0926-SM-4KL1N 7.3
GTEX-11DXX-1626-SM-5H11H 7.3
GTEX-ZPCL-1726-SM-57WEO 7.3
GTEX-13FTW-2026-SM-5IJE2 7.3
GTEX-YB5E-1526-SM-5IFIE 7.3
GTEX-13PL7-2626-SM-5IFH4 7.1
GTEX-YF7O-1826-SM-5IFIU 7.1
GTEX-13CF3-1226-SM-5LZXN 7.0
GTEX-13O21-1026-SM-5IJDU 7.0
GTEX-11DXZ-1326-SM-5H11X 7.0
GTEX-1122O-1326-SM-5H11F 7.0
GTEX-YEC4-1726-SM-4W21E 6.9
GTEX-ZXES-1526-SM-5NQ95 6.8
GTEX-X5EB-1626-SM-4E3IV 6.8
GTEX-Y9LG-1626-SM-5IFHM 6.1
GTEX-111YS-1426-SM-5GID8 4.2
Show all

SMALL INTESTINE - FANTOM5 CAGE

Average Tags Per Million

19.8

FANTOM5 sample id

Sample description

Tags Per Million

Small intestine
Tags Per Million: 19.8
FF:10024-101D6 15,40,85 years, mixed 19.8

Contact

  • BLOG
  • PRESS ROOM
  • contact@proteinatlas.org

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS
  • DOWNLOADABLE DATA

The Human Protein Atlas

  • ANTIBODY AVAILABILITY
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.