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TISSUE ATLAS PRIMARY DATA CAUDATE

GENE/PROTEIN

Antibody validation


Dictionary

Caudate

CAUDATE - Expression summary

Protein expression

h
m
l
n

RNA expression

GTEx:36.8RPKM
FANTOM5:127.1Tags Per Million

CAUDATE - Annotated protein expression

Annotated protein
expression

Glial cells:Not detected
Neuronal cells:Medium
 

Antibody staining

Antibody HPA016936

 

Glial cells

Not detected  

Neuronal cells

Medium  
 
 
 

CAUDATE - HPA RNA-seq

Pending HPA RNA-seq analysis


CAUDATE - GTEx RNA-seq

Average RPKM

36.8

GTEx sample id

RPKM

 

Brain - Caudate (basal ganglia)

Brain - Caudate (basal ganglia)
RPKM: 36.8
Samples: 117

Max RPKM: 66.3
Min RPKM: 10.2
Std RPKM: 12.6
Median RPKM: 37.8
GTEX-139TT-0011-R5b-SM-5K7W8 66.3
GTEX-P44H-0011-R5A-SM-2XCEX 61.8
GTEX-13G51-0011-R5a-SM-5L3EB 61.2
GTEX-T6MN-0011-R5A-SM-32QPD 61.0
GTEX-12WSC-0011-R5b-SM-5CVNS 58.0
GTEX-T2IS-0011-R5A-SM-32QP4 57.2
GTEX-131YS-0011-R5b-SM-5K7YB 56.9
GTEX-13X6K-0011-R5b-SM-5PNUE 54.5
GTEX-X585-0011-R5A-SM-46MVI 54.0
GTEX-12WSA-0011-R5b-SM-5GU5I 53.3
GTEX-13RTJ-0011-R5a-SM-5P9HR 52.8
GTEX-TSE9-0011-R5A-SM-3DB7J 52.7
GTEX-ZUA1-0011-R5b-SM-51MTG 52.7
GTEX-ZAB4-0011-R5a-SM-4SOKC 52.5
GTEX-QVJO-0011-R5A-SM-2S1QM 51.4
GTEX-1399T-0011-R5b-SM-5IJDK 51.1
GTEX-11OF3-0011-R5a-SM-57WB4 50.8
GTEX-1313W-0011-R5b-SM-5L3EP 49.6
GTEX-132Q8-0011-R5a-SM-5IJDM 49.3
GTEX-UTHO-0011-R5A-SM-3GIJD 49.0
GTEX-11H98-0011-R5b-SM-57WCF 48.9
GTEX-13O3Q-0011-R5b-SM-5P9H4 48.5
GTEX-11NV4-0011-R5a-SM-5NQ88 48.2
GTEX-Q2AG-0011-R5A-SM-2HMJH 47.4
GTEX-WHSE-0011-R5A-SM-3P5ZO 47.0
GTEX-13VXU-0011-R5a-SM-5O9D7 46.3
GTEX-WZTO-0011-R5B-SM-3NMC5 46.3
GTEX-13N1W-0011-R5b-SM-5MR5Q 46.2
GTEX-WWYW-0011-R5A-SM-3NB3E 45.8
GTEX-12ZZY-0011-R5a-SM-5EGL9 45.7
GTEX-S7SE-0011-R5A-SM-2XCDA 45.6
GTEX-14BIM-0011-R5b-SM-5S2RM 45.3
GTEX-T5JC-0011-R5A-SM-32PLK 44.9
GTEX-13SLX-0011-R5a-SM-5O9BV 44.8
GTEX-13JUV-0011-R5a-SM-5LZY5 44.7
GTEX-145LS-0011-R5a-SM-5SI65 44.5
GTEX-WL46-0011-R5A-SM-3LK6V 44.1
GTEX-12WSM-0011-R5a-SM-5EQ4Y 43.9
GTEX-13X6J-0011-R5b-SM-5PNWT 43.4
GTEX-14ABY-0011-R5b-SM-5SI7B 43.0
GTEX-WVLH-0011-R5A-SM-3MJFW 42.8
GTEX-11GSP-0011-R5a-SM-57WBE 42.7
GTEX-145MH-0011-R5a-SM-5P9JT 42.7
GTEX-13FHO-0011-R5b-SM-5LZZ3 42.0
GTEX-N7MS-0011-R5a-SM-2HMK8 41.7
GTEX-N7MT-0011-R5a-SM-2I3G6 41.7
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 41.2
GTEX-QMR6-0011-R5A-SM-32PKT 40.8
GTEX-13FXS-0011-R5b-SM-5LZYE 40.5
GTEX-Z93S-0011-R5b-SM-4RGNI 40.5
GTEX-13X6I-0011-R5a-SM-5PNWW 40.3
GTEX-PVOW-0011-R5A-SM-32PL7 39.8
GTEX-Y8DK-0011-R5B-SM-4RTW6 39.6
GTEX-13NYS-0011-R5a-SM-5MR4D 39.4
GTEX-13O3O-0011-R5b-SM-5KM44 39.2
GTEX-RU72-0011-R5A-SM-2TF6U 38.6
GTEX-12WSF-0011-R5a-SM-5HL8K 38.4
GTEX-13NYB-0011-R5a-SM-5MR45 37.8
GTEX-13OVL-0011-R5b-SM-5L3FU 37.8
GTEX-13CZV-0011-R5a-SM-5K7XA 37.7
GTEX-12WSB-0011-R5b-SM-5GU67 36.9
GTEX-R55E-0011-R5A-SM-2TC5N 36.8
GTEX-ZE9C-0011-R5a-SM-5EGLO 36.7
GTEX-13OW6-0011-R5a-SM-5O9BK 36.1
GTEX-12WSD-0011-R5b-SM-5CVNG 36.0
GTEX-13OW8-0011-R5b-SM-5L3FQ 35.9
GTEX-13FLV-0011-R5a-SM-5LZWT 35.7
GTEX-OHPN-0011-R5A-SM-2I5FF 35.5
GTEX-13FLW-0011-R5a-SM-5LZX6 34.8
GTEX-13S7M-0011-R5b-SM-5P9HS 34.3
GTEX-13OVH-0011-R5b-SM-5KM4L 34.2
GTEX-RVPU-0011-R5A-SM-2XCAD 33.9
GTEX-13OW5-0011-R5b-SM-5L3FR 33.2
GTEX-13OW7-0011-R5b-SM-5O9DM 32.8
GTEX-RVPV-0011-R5A-SM-2TF69 32.3
GTEX-NL3H-0011-R5a-SM-2I3GB 31.2
GTEX-XOTO-0011-R5A-SM-4B657 31.0
GTEX-13OVJ-0011-R5a-SM-5P9H7 30.2
GTEX-NPJ8-0011-R5a-SM-2HMJY 30.2
GTEX-X4XX-0011-R5A-SM-46MWN 30.1
GTEX-YFC4-0011-R5a-SM-4RGLR 30.0
GTEX-13SLW-0011-R5b-SM-5SI6Z 29.6
GTEX-NL4W-0011-R5a-SM-2I3GD 29.4
GTEX-PWO3-0011-R5A-SM-2I5EZ 29.4
GTEX-12ZZX-0011-R5a-SM-5HL89 29.3
GTEX-12ZZW-0011-R5a-SM-5DUVN 29.2
GTEX-13JVG-0011-R5a-SM-5MR4O 28.5
GTEX-ZXG5-0011-R5b-SM-57WBN 28.4
GTEX-ZE7O-0011-R5a-SM-57WBO 28.0
GTEX-XMD1-0011-R5A-SM-4AT47 27.5
GTEX-ZF28-0011-R5a-SM-4WWCZ 26.7
GTEX-144GO-0011-R5a-SM-5PNUR 25.9
GTEX-14BIN-0011-R5b-SM-5SI78 24.9
GTEX-NPJ7-0011-R5a-SM-33HBK 24.0
GTEX-12WSH-0011-R5b-SM-5P9F3 23.6
GTEX-13PVQ-0011-R5b-SM-5O9DI 23.4
GTEX-X261-0011-R5A-SM-3NMB4 23.3
GTEX-ZVZQ-0011-R5b-SM-57WDC 22.8
GTEX-11WQC-0011-R5a-SM-5BC74 21.9
GTEX-OXRN-0011-R5A-SM-2I5EF 21.8
GTEX-13CIG-0011-R5b-SM-5L3F2 21.2
GTEX-ZVT3-0011-R5a-SM-51MSI 20.3
GTEX-139T8-0011-R5b-SM-5J1MO 19.4
GTEX-13112-0011-R5b-SM-5DUV8 19.1
GTEX-13PLJ-0011-R5a-SM-5O9BG 18.9
GTEX-144GL-0011-R5b-SM-5PNUJ 18.9
GTEX-139TS-0011-R5b-SM-5J2MZ 18.5
GTEX-ZV68-0011-R5a-SM-4YCDW 18.3
GTEX-1445S-0011-R5a-SM-5PNUS 17.4
GTEX-YJ89-0011-R5a-SM-4V6GM 17.4
GTEX-11UD1-0011-R5b-SM-5P9FP 14.4
GTEX-1477Z-0011-R5b-SM-5PNUO 14.4
GTEX-13CF2-0011-R5a-SM-5LZWS 14.3
GTEX-13FHP-0011-R5b-SM-5LZY2 14.1
GTEX-S7PM-0011-R5A-SM-3NM8G 12.7
GTEX-13NZA-0011-R5b-SM-5KM4K 10.5
GTEX-145MG-0011-R5b-SM-5S2VU 10.2
Show all

CAUDATE - FANTOM5 CAGE

Average Tags Per Million

127.1

FANTOM5 sample id

Sample description

Tags Per Million

Caudate nucleus
Tags Per Million: 127.1
FF:10379-105H1 89 years, female 148.2
FF:10164-103B2 76 years, female 106.0

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