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TISSUE ATLAS PRIMARY DATA CAUDATE
MOUSE BRAIN

GENE/PROTEIN

Antibody validation


Dictionary

Caudate

CAUDATE - Expression summary

Protein expression

h
m
l
n

RNA expression

GTEx:52.8RPKM
FANTOM5:250.7Tags Per Million

CAUDATE - Annotated protein expression

Annotated protein
expression

Glial cells:Not detected
Neuronal cells:High
 

Antibody staining

Antibody HPA026307

 

Antibody HPA051783

 

Antibody HPA051785

 

Antibody HPA053973

 

Antibody CAB006849

 

Glial cells

Not detected   Not detected   Not detected   Not detected   Not detected  

Neuronal cells

High   High   Medium   Medium   High  
         
         
         

CAUDATE - HPA RNA-seq

Pending HPA RNA-seq analysis


CAUDATE - GTEx RNA-seq

Average RPKM

52.8

GTEx sample id

RPKM

 

Brain - Caudate (basal ganglia)

Brain - Caudate (basal ganglia)
RPKM: 52.8
Samples: 117

Max RPKM: 110.1
Min RPKM: 9.4
Std RPKM: 25.8
Median RPKM: 51.7
GTEX-13O3Q-0011-R5b-SM-5P9H4 110.1
GTEX-145MH-0011-R5a-SM-5P9JT 104.2
GTEX-13G51-0011-R5a-SM-5L3EB 102.2
GTEX-131YS-0011-R5b-SM-5K7YB 98.3
GTEX-1399T-0011-R5b-SM-5IJDK 98.0
GTEX-12WSC-0011-R5b-SM-5CVNS 95.1
GTEX-Q2AG-0011-R5A-SM-2HMJH 94.7
GTEX-13SLX-0011-R5a-SM-5O9BV 92.3
GTEX-WHSE-0011-R5A-SM-3P5ZO 91.6
GTEX-13OVL-0011-R5b-SM-5L3FU 90.7
GTEX-1313W-0011-R5b-SM-5L3EP 89.4
GTEX-13FXS-0011-R5b-SM-5LZYE 88.4
GTEX-ZUA1-0011-R5b-SM-51MTG 88.2
GTEX-13X6J-0011-R5b-SM-5PNWT 87.7
GTEX-N7MS-0011-R5a-SM-2HMK8 85.4
GTEX-13VXU-0011-R5a-SM-5O9D7 84.8
GTEX-13S7M-0011-R5b-SM-5P9HS 82.2
GTEX-13N1W-0011-R5b-SM-5MR5Q 82.1
GTEX-WL46-0011-R5A-SM-3LK6V 82.1
GTEX-T5JC-0011-R5A-SM-32PLK 80.6
GTEX-11GSP-0011-R5a-SM-57WBE 79.6
GTEX-WVLH-0011-R5A-SM-3MJFW 79.5
GTEX-13FHO-0011-R5b-SM-5LZZ3 77.1
GTEX-WZTO-0011-R5B-SM-3NMC5 76.9
GTEX-12ZZY-0011-R5a-SM-5EGL9 75.9
GTEX-14BIM-0011-R5b-SM-5S2RM 75.2
GTEX-145LS-0011-R5a-SM-5SI65 75.1
GTEX-RU72-0011-R5A-SM-2TF6U 74.5
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 73.9
GTEX-13O3O-0011-R5b-SM-5KM44 73.9
GTEX-S7SE-0011-R5A-SM-2XCDA 73.1
GTEX-T6MN-0011-R5A-SM-32QPD 73.0
GTEX-14ABY-0011-R5b-SM-5SI7B 72.4
GTEX-13FLW-0011-R5a-SM-5LZX6 71.4
GTEX-N7MT-0011-R5a-SM-2I3G6 70.3
GTEX-QVJO-0011-R5A-SM-2S1QM 68.6
GTEX-13RTJ-0011-R5a-SM-5P9HR 67.6
GTEX-11NV4-0011-R5a-SM-5NQ88 66.9
GTEX-RVPV-0011-R5A-SM-2TF69 66.4
GTEX-11OF3-0011-R5a-SM-57WB4 65.1
GTEX-13OW7-0011-R5b-SM-5O9DM 64.8
GTEX-X585-0011-R5A-SM-46MVI 64.6
GTEX-R55E-0011-R5A-SM-2TC5N 64.0
GTEX-WWYW-0011-R5A-SM-3NB3E 63.8
GTEX-12WSM-0011-R5a-SM-5EQ4Y 63.3
GTEX-T2IS-0011-R5A-SM-32QP4 63.2
GTEX-13OW8-0011-R5b-SM-5L3FQ 62.3
GTEX-13OW6-0011-R5a-SM-5O9BK 60.8
GTEX-13JUV-0011-R5a-SM-5LZY5 60.7
GTEX-13OW5-0011-R5b-SM-5L3FR 60.4
GTEX-13NYB-0011-R5a-SM-5MR45 59.5
GTEX-12WSD-0011-R5b-SM-5CVNG 58.1
GTEX-12WSF-0011-R5a-SM-5HL8K 58.0
GTEX-13FLV-0011-R5a-SM-5LZWT 57.2
GTEX-Z93S-0011-R5b-SM-4RGNI 56.0
GTEX-Y8DK-0011-R5B-SM-4RTW6 54.2
GTEX-XOTO-0011-R5A-SM-4B657 53.2
GTEX-ZE9C-0011-R5a-SM-5EGLO 51.9
GTEX-ZAB4-0011-R5a-SM-4SOKC 51.7
GTEX-13OVH-0011-R5b-SM-5KM4L 49.9
GTEX-13X6K-0011-R5b-SM-5PNUE 49.9
GTEX-139TT-0011-R5b-SM-5K7W8 49.6
GTEX-PVOW-0011-R5A-SM-32PL7 49.4
GTEX-TSE9-0011-R5A-SM-3DB7J 48.6
GTEX-RVPU-0011-R5A-SM-2XCAD 47.9
GTEX-ZE7O-0011-R5a-SM-57WBO 47.6
GTEX-11H98-0011-R5b-SM-57WCF 46.7
GTEX-14BIN-0011-R5b-SM-5SI78 46.5
GTEX-12ZZX-0011-R5a-SM-5HL89 45.6
GTEX-12ZZW-0011-R5a-SM-5DUVN 45.5
GTEX-13CZV-0011-R5a-SM-5K7XA 43.9
GTEX-13X6I-0011-R5a-SM-5PNWW 42.9
GTEX-NL4W-0011-R5a-SM-2I3GD 42.0
GTEX-UTHO-0011-R5A-SM-3GIJD 41.5
GTEX-ZVZQ-0011-R5b-SM-57WDC 40.4
GTEX-ZXG5-0011-R5b-SM-57WBN 37.3
GTEX-13CIG-0011-R5b-SM-5L3F2 37.1
GTEX-13JVG-0011-R5a-SM-5MR4O 37.0
GTEX-YJ89-0011-R5a-SM-4V6GM 36.4
GTEX-12WSB-0011-R5b-SM-5GU67 36.3
GTEX-13NYS-0011-R5a-SM-5MR4D 36.3
GTEX-144GO-0011-R5a-SM-5PNUR 35.9
GTEX-132Q8-0011-R5a-SM-5IJDM 35.7
GTEX-P44H-0011-R5A-SM-2XCEX 35.7
GTEX-YFC4-0011-R5a-SM-4RGLR 35.4
GTEX-OHPN-0011-R5A-SM-2I5FF 33.5
GTEX-ZF28-0011-R5a-SM-4WWCZ 31.2
GTEX-144GL-0011-R5b-SM-5PNUJ 30.7
GTEX-13SLW-0011-R5b-SM-5SI6Z 29.1
GTEX-13112-0011-R5b-SM-5DUV8 28.8
GTEX-NL3H-0011-R5a-SM-2I3GB 27.8
GTEX-OXRN-0011-R5A-SM-2I5EF 27.0
GTEX-13FHP-0011-R5b-SM-5LZY2 26.0
GTEX-11WQC-0011-R5a-SM-5BC74 24.9
GTEX-PWO3-0011-R5A-SM-2I5EZ 24.1
GTEX-13PVQ-0011-R5b-SM-5O9DI 23.4
GTEX-ZV68-0011-R5a-SM-4YCDW 23.2
GTEX-13PLJ-0011-R5a-SM-5O9BG 22.9
GTEX-X261-0011-R5A-SM-3NMB4 22.7
GTEX-XMD1-0011-R5A-SM-4AT47 22.6
GTEX-NPJ8-0011-R5a-SM-2HMJY 22.2
GTEX-ZVT3-0011-R5a-SM-51MSI 20.3
GTEX-X4XX-0011-R5A-SM-46MWN 19.7
GTEX-13OVJ-0011-R5a-SM-5P9H7 19.1
GTEX-QMR6-0011-R5A-SM-32PKT 18.2
GTEX-13CF2-0011-R5a-SM-5LZWS 17.6
GTEX-139TS-0011-R5b-SM-5J2MZ 17.3
GTEX-12WSH-0011-R5b-SM-5P9F3 16.9
GTEX-1445S-0011-R5a-SM-5PNUS 16.4
GTEX-12WSA-0011-R5b-SM-5GU5I 15.2
GTEX-11UD1-0011-R5b-SM-5P9FP 14.5
GTEX-S7PM-0011-R5A-SM-3NM8G 13.7
GTEX-1477Z-0011-R5b-SM-5PNUO 13.5
GTEX-NPJ7-0011-R5a-SM-33HBK 13.4
GTEX-145MG-0011-R5b-SM-5S2VU 11.6
GTEX-139T8-0011-R5b-SM-5J1MO 10.2
GTEX-13NZA-0011-R5b-SM-5KM4K 9.4
Show all

CAUDATE - FANTOM5 CAGE

Average Tags Per Million

250.7

FANTOM5 sample id

Sample description

Tags Per Million

Caudate nucleus
Tags Per Million: 250.7
FF:10379-105H1 89 years, female 318.6
FF:10164-103B2 76 years, female 182.8

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