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TISSUE ATLAS PRIMARY DATA CEREBRAL CORTEX
MOUSE BRAIN

GENE/PROTEIN

Antibody validation


Dictionary

Cerebral cortex

Tissue proteome

Brain
Extended brain samples

CEREBRAL CORTEX - Expression summary

Protein expression

h
m
l
n

RNA expression

HPA:214.7TPM
GTEx:46.4RPKM

CEREBRAL CORTEX - Annotated protein expression

Annotated protein
expression

Endothelial cells:Not detected
Glial cells:Not detected
Neuronal cells:High
Neuropil:Medium
 

Antibody staining

Antibody HPA026307

 

Antibody HPA051783

 

Antibody HPA051785

 

Antibody HPA053973

 

Antibody CAB006849

 

Endothelial cells

Not detected   Not detected   Low   Not detected   Not detected  

Glial cells

Not detected   Low   Not detected   Low   Not detected  

Neuronal cells

High   High   Medium   High   High  

Neuropil

Medium   High   Low   Medium   High  
         
         
         

CEREBRAL CORTEX - HPA RNA-seq

Average TPM

214.7

N/A Male, age 5
Sample 1
TPM: 318.6
overview Female, age 40
Sample 2
TPM: 85.5
Cell types%
Neuronal cells: 35
Glial cells and endothelial cells: 65
overview Male, age 70
Sample 3
TPM: 239.9
Cell types%
Neuronal cells: 35
Glial cells and endothelial cells: 65

CEREBRAL CORTEX - GTEx RNA-seq

Average RPKM

46.4

GTEx sample id

RPKM

34.845.553.816.675.10102030405060708090100
 
34.845.553.816.675.10102030405060708090100

Brain - Cortex

Brain - Cortex
RPKM: 44.9
Samples: 114

Max RPKM: 100.3
Min RPKM: 16.6
Std RPKM: 13.5
Median RPKM: 45.5
GTEX-11OF3-2926-SM-5HL78 100.3
GTEX-T5JC-2426-SM-3NMDB 75.1
GTEX-13FXS-3126-SM-5J2NN 74.3
GTEX-WL46-2926-SM-3LK82 71.5
GTEX-WHSE-3026-SM-3P5ZH 67.5
GTEX-X585-3026-SM-46MWF 64.8
GTEX-WVLH-3026-SM-3MJG9 62.5
GTEX-RNOR-2326-SM-2TF4I 62.2
GTEX-12126-1026-SM-5P9JJ 60.3
GTEX-Q2AG-2926-SM-2HMJ3 60.2
GTEX-13SLX-3126-SM-5S2Q5 60.1
GTEX-T6MN-2626-SM-32PMQ 59.8
GTEX-ZYFD-3026-SM-5E44C 59.8
GTEX-11ZUS-2926-SM-5FQSL 59.5
GTEX-12WSC-3026-SM-5GCNF 59.5
GTEX-14BMV-3026-SM-5S2PQ 59.3
GTEX-WWYW-3126-SM-3NB39 58.9
GTEX-X4XX-3026-SM-3NMB2 58.8
GTEX-12ZZX-2926-SM-5GCOQ 57.5
GTEX-QVJO-1426-SM-2S1QY 57.4
GTEX-ZUA1-3026-SM-59HJC 56.3
GTEX-131YS-3126-SM-5KLYT 55.7
GTEX-117XS-3026-SM-5N9CA 55.5
GTEX-13VXU-2926-SM-5LU5C 55.3
GTEX-1313W-3126-SM-5LZUI 55.1
GTEX-XOTO-3026-SM-4B65M 54.9
GTEX-11NUK-2926-SM-5A5MD 54.5
GTEX-13NYC-2826-SM-5K7WR 54.1
GTEX-13OW6-3026-SM-5J2MI 53.8
GTEX-13FLW-1426-SM-5K7YE 53.6
GTEX-14ASI-3026-SM-5S2PN 53.4
GTEX-Z93S-2926-SM-57WB9 53.4
GTEX-13OVH-3026-SM-5MR4N 53.3
GTEX-WZTO-2926-SM-3NM9I 53.2
GTEX-11DXY-3226-SM-5GIDE 52.9
GTEX-YFC4-3126-SM-5PNV6 52.5
GTEX-145LS-3126-SM-5Q5BY 52.0
GTEX-T2IS-3026-SM-32QPM 50.5
GTEX-13QIC-2926-SM-5J2NF 50.4
GTEX-R55F-1326-SM-5S2V4 50.3
GTEX-145MH-3026-SM-5Q5DZ 49.5
GTEX-145MF-2726-SM-5O995 49.2
GTEX-ZVT3-3026-SM-5E43N 49.2
GTEX-1128S-2726-SM-5H12C 49.0
GTEX-11DXW-1126-SM-5H12Q 48.9
GTEX-11PRG-2926-SM-5987A 48.7
GTEX-XLM4-3026-SM-4AT6L 48.2
GTEX-11GSO-2926-SM-5HL73 48.1
GTEX-13O3O-3126-SM-5KM3H 48.0
GTEX-13O3Q-2926-SM-5KM45 47.6
GTEX-145MG-3026-SM-5RQJA 46.9
GTEX-13S7M-3126-SM-5RQJQ 46.7
GTEX-ZAJG-3126-SM-5HL9J 46.6
GTEX-ZAK1-3026-SM-5S2MJ 46.4
GTEX-Y111-2726-SM-4TT3N 46.1
GTEX-YJ89-3026-SM-5IFJI 45.7
GTEX-1399T-3026-SM-5KLZC 45.6
GTEX-PVOW-2526-SM-2XCF7 45.5
GTEX-12ZZY-3026-SM-5GCOU 45.4
GTEX-12WSH-3026-SM-5CVNI 44.6
GTEX-TSE9-3026-SM-3DB76 44.6
GTEX-11ONC-2926-SM-5P9JM 44.4
GTEX-12ZZW-2926-SM-5LZUP 43.8
GTEX-144GL-3026-SM-5Q5CW 43.2
GTEX-13NYS-3126-SM-5KLYV 42.9
GTEX-12ZZZ-3026-SM-5BC67 42.8
GTEX-Y8DK-0826-SM-4TT3T 42.1
GTEX-11O72-2926-SM-5BC4V 42.0
GTEX-13FHO-3026-SM-5J1O9 41.8
GTEX-RU72-3026-SM-5SI7Y 41.7
GTEX-11GS4-3126-SM-5A5LH 41.4
GTEX-13OW8-2826-SM-5L3GC 41.0
GTEX-14A5I-2926-SM-5Q5CQ 40.9
GTEX-13NYB-3026-SM-5IJD7 40.7
GTEX-13PL6-3126-SM-5LUAR 39.9
GTEX-OXRN-2426-SM-2I5EQ 38.3
GTEX-11OC5-0726-SM-5P9JK 37.5
GTEX-13FHP-3026-SM-5IJBS 37.3
GTEX-1192X-3126-SM-5N9BY 37.2
GTEX-111FC-3126-SM-5GZZ2 36.9
GTEX-11EI6-3026-SM-5GZZO 36.6
GTEX-UTHO-3026-SM-3GAFB 36.1
GTEX-QVUS-2826-SM-3GADB 35.2
GTEX-11EMC-3226-SM-5EGKW 34.9
GTEX-13OW7-3026-SM-5L3GY 34.9
GTEX-132Q8-3026-SM-5PNVG 34.7
GTEX-12WSD-3126-SM-5HL7P 34.6
GTEX-N7MT-1126-SM-5SI7V 33.8
GTEX-NPJ7-2726-SM-2I3FT 33.6
GTEX-QMR6-1426-SM-32PLA 33.3
GTEX-NPJ8-1526-SM-2D7VU 33.2
GTEX-ZE7O-3126-SM-5HL5X 33.1
GTEX-1117F-3226-SM-5N9CT 32.5
GTEX-13X6J-3026-SM-5Q5CU 31.3
GTEX-ZZPT-3026-SM-5GZXH 31.0
GTEX-13JUV-2926-SM-5LZX7 30.5
GTEX-13JVG-3126-SM-5L3FH 30.4
GTEX-131XW-3126-SM-5LZUC 30.0
GTEX-11WQK-3026-SM-5EQL6 29.1
GTEX-13IVO-2926-SM-5L3CZ 27.4
GTEX-13PVQ-3026-SM-5SI93 27.1
GTEX-147GR-3026-SM-5S2ML 26.4
GTEX-11GSP-3226-SM-5986O 25.4
GTEX-11NV4-2126-SM-5N9DS 25.4
GTEX-PWO3-0926-SM-2I5EY 25.3
GTEX-144FL-3026-SM-5O99C 25.1
GTEX-QDT8-2926-SM-32PKC 25.1
GTEX-1445S-3026-SM-5O9BR 25.0
GTEX-13OVJ-2826-SM-5L3GW 24.3
GTEX-139T8-1026-SM-5J2MC 23.8
GTEX-13X6K-2926-SM-5Q5D5 23.4
GTEX-11TTK-2926-SM-5PNYP 22.3
GTEX-12WSA-2926-SM-5EQ4D 19.3
GTEX-13G51-3026-SM-5IJB8 16.6
Show all
34.450.160.215.884.301020304050607080
 
34.450.160.215.884.301020304050607080

Brain - Frontal Cortex (BA9)

Brain - Frontal Cortex (BA9)
RPKM: 47.9
Samples: 108

Max RPKM: 84.3
Min RPKM: 15.8
Std RPKM: 16.3
Median RPKM: 50.1
GTEX-12WSE-0011-R10b-SM-5P9JV 84.3
GTEX-13N1W-0011-R10b-SM-5MR4H 78.7
GTEX-13QJC-0011-R10a-SM-5SI63 73.2
GTEX-Q2AG-0011-R10A-SM-2HMLA 72.6
GTEX-14ASI-0011-R10b-SM-5S2VZ 72.5
GTEX-N7MT-0011-R10A-SM-2I3E1 71.4
GTEX-131XH-0011-R10a-SM-5EGLJ 70.7
GTEX-X585-0011-R10A-SM-46MUY 70.5
GTEX-13S7M-0011-R10b-SM-5PNZB 69.0
GTEX-13O3O-0011-R10a-SM-5LUA9 68.7
GTEX-13SLX-0011-R10a-SM-5P9HV 68.5
GTEX-NL3H-0011-R10A-SM-2I3E9 68.2
GTEX-T5JC-0011-R10A-SM-32PM2 67.6
GTEX-13CZV-0011-R10b-SM-5LZYD 66.7
GTEX-13OW7-0011-R10a-SM-5L3H3 66.7
GTEX-X4XX-0011-R10B-SM-46MWO 65.7
GTEX-12ZZX-0011-R10b-SM-5DUWK 65.0
GTEX-13QIC-0011-R10a-SM-5O9C7 63.8
GTEX-13RTJ-0011-R10b-SM-5O9CW 63.7
GTEX-WVLH-0011-R10A-SM-3MJFM 63.5
GTEX-145MG-0011-R10a-SM-5PNWG 62.1
GTEX-13OVL-0011-R10a-SM-5L3GS 61.5
GTEX-N7MS-0011-R10A-SM-2HMJK 61.4
GTEX-13O3Q-0011-R10b-SM-5KM39 61.1
GTEX-13OW6-0011-R10a-SM-5L3HE 60.7
GTEX-T6MN-0011-R10A-SM-32QP7 60.7
GTEX-145MH-0011-R10b-SM-5PNUK 60.3
GTEX-1313W-0011-R10b-SM-5DUXA 60.2
GTEX-WZTO-0011-R10B-SM-4E3KB 60.2
GTEX-12WSC-0011-R10a-SM-5GU57 60.0
GTEX-145LS-0011-R10a-SM-5PNUQ 59.9
GTEX-WL46-0011-R10A-SM-3MJFQ 59.8
GTEX-14BIN-0011-R10a-SM-5S2UA 59.6
GTEX-QVJO-0011-R10A-SM-2S1QJ 59.0
GTEX-13NYS-0011-R10a-SM-5MR4S 58.9
GTEX-131YS-0011-R10b-SM-5EQ5N 58.2
GTEX-12WSH-0011-R10a-SM-5LZUS 58.0
GTEX-12ZZZ-0011-R10a-SM-5P9HC 57.5
GTEX-12WSF-0011-R10a-SM-5LZVH 56.7
GTEX-12WSM-0011-R10a-SM-5DUWV 55.6
GTEX-S7SE-0011-R10A-SM-2XCDF 55.6
GTEX-WWYW-0011-R10A-SM-3NB35 54.9
GTEX-ZF28-0011-R10a-SM-4WWEH 54.7
GTEX-NPJ8-0011-R10A-SM-2YUMO 54.6
GTEX-147GR-0011-R10b-SM-5S2UM 54.3
GTEX-Y8DK-0011-R10A-SM-4SOK1 53.6
GTEX-13X6I-0011-R10a-SM-5PNWI 52.6
GTEX-RVPU-0011-R10A-SM-2XCAH 52.6
GTEX-YFC4-0011-R10a-SM-4SOK5 52.4
GTEX-14BIL-0011-R10a-SM-5SI75 52.3
GTEX-ZVZQ-0011-R10b-SM-51MRT 51.9
GTEX-13FXS-0011-R10a-SM-5J2MA 51.1
GTEX-13X6J-0011-R10b-SM-5PNWA 50.7
GTEX-13X6K-0011-R10a-SM-5P9JR 50.2
GTEX-13FLV-0011-R10b-SM-5LZZ2 50.0
GTEX-13FHO-0011-R10b-SM-5J2MM 49.9
GTEX-145LU-0011-R10a-SM-5PNWJ 49.6
GTEX-12ZZY-0011-R10b-SM-5HL7W 49.0
GTEX-13FLW-0011-R10b-SM-5LZZF 49.0
GTEX-YJ89-0011-R10a-SM-4SOK9 48.7
GTEX-XLM4-0011-R10A-SM-4AT5P 48.5
GTEX-13FTZ-0011-R10b-SM-5KLZS 46.2
GTEX-Z93S-0011-R10a-SM-4RGNM 45.9
GTEX-132Q8-0011-R10b-SM-5DUWZ 45.6
GTEX-13NYB-0011-R10a-SM-5KM43 45.6
GTEX-ZDXO-0011-R10a-SM-4WWD8 44.8
GTEX-11H98-0011-R10b-SM-5NQ98 44.7
GTEX-ZVT3-0011-R10b-SM-57WB6 44.6
GTEX-NPJ7-0011-R10A-SM-2I3E5 44.5
GTEX-12126-0011-R10b-SM-5BC6T 42.5
GTEX-13G51-0011-R10b-SM-5LZYF 42.3
GTEX-147F4-0011-R10b-SM-5S2WC 41.7
GTEX-13SLW-0011-R10a-SM-5S2UI 40.0
GTEX-11WQC-0011-R10a-SM-57WCT 39.9
GTEX-ZAB4-0011-R10a-SM-4SOKH 38.1
GTEX-13OW8-0011-R10a-SM-5L3H6 37.0
GTEX-OXRN-0011-R10A-SM-2I5GC 36.7
GTEX-ZUA1-0011-R10a-SM-51MT6 36.6
GTEX-X261-0011-R10B-SM-4E3JT 36.5
GTEX-13JUV-0011-R10b-SM-5LZXR 35.4
GTEX-12ZZW-0011-R10b-SM-5HL9X 34.7
GTEX-TSE9-0011-R10A-SM-3DB7O 33.6
GTEX-13NZA-0011-R10b-SM-5KM54 33.3
GTEX-13IVO-0011-R10a-SM-5LZY3 31.3
GTEX-QMR6-0011-R10A-SM-32PKO 31.3
GTEX-X4EP-0011-R10B-SM-4QASJ 30.4
GTEX-ZXG5-0011-R10a-SM-57WDD 28.7
GTEX-QVUS-0011-R10A-SM-3GIK3 28.6
GTEX-QDT8-0011-R10A-SM-32PKG 28.1
GTEX-12WSA-0011-R10b-SM-5P9ET 27.6
GTEX-11GSP-0011-R10a-SM-5NQ7J 27.2
GTEX-NL4W-0011-R10A-SM-2I3DY 26.8
GTEX-12WSD-0011-R10b-SM-5GU79 26.3
GTEX-OXRO-0011-R10A-SM-2I5EH 25.2
GTEX-139TS-0011-R10a-SM-5K7TU 24.7
GTEX-131XW-0011-R10a-SM-5DUVA 24.4
GTEX-14753-0011-R10b-SM-5S2WE 24.2
GTEX-P44H-0011-R10A-SM-2XCEK 23.8
GTEX-11ZUS-0011-R10b-SM-5BC79 23.5
GTEX-1477Z-0011-R10b-SM-5S2RF 23.0
GTEX-11WQK-0011-R10a-SM-5BC6R 22.6
GTEX-13OVJ-0011-R10b-SM-5L3HT 22.3
GTEX-13JVG-0011-R10b-SM-5KM2P 21.9
GTEX-ZV68-0011-R10a-SM-51MT7 21.1
GTEX-1445S-0011-R10a-SM-5PNWB 20.5
GTEX-XMD1-0011-R10A-SM-4AT4A 18.5
GTEX-13N2G-0011-R10a-SM-5MR34 16.5
GTEX-ZE7O-0011-R10a-SM-57WAZ 15.8
Show all

CEREBRAL CORTEX - FANTOM5 CAGE

No Fantom CAGE analysis found for this gene / tissue

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