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TISSUE ATLAS PRIMARY DATA SMALL INTESTINE

GENE/PROTEIN

Antibody validation


Dictionary

Small intestine

Tissue proteome

Small intestine

SMALL INTESTINE - Expression summary

Protein expression

h
m
l
n

RNA expression

HPA:26.0TPM
GTEx:14.0RPKM
FANTOM5:32.8Tags Per Million

SMALL INTESTINE - Annotated protein expression

Annotated protein
expression

Glandular cells:Not detected
 

Antibody staining

Antibody HPA044653

 

Antibody CAB004079

 

Glandular cells

Low   Not detected  
   
   
   

SMALL INTESTINE - HPA RNA-seq

Average TPM

26.0

overview Male, age 65
Sample 1
TPM: 21.5
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 39
Sample 2
TPM: 24.2
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 68
Sample 3
TPM: 32.5
Cell types%
Glandular cells: 30
Smooth muscle cells: 15
Other cell types: 55
N/A Male, age 85
Sample 4
TPM: 25.6

SMALL INTESTINE - GTEx RNA-seq

Average RPKM

14.0

GTEx sample id

RPKM

7.711.418.92.535.505101520253035
 
7.711.418.92.535.505101520253035

Small Intestine - Terminal Ileum

Small Intestine - Terminal Ileum
RPKM: 14.0
Samples: 88

Max RPKM: 38.5
Min RPKM: 2.5
Std RPKM: 8.3
Median RPKM: 11.4
GTEX-X15G-1426-SM-4PQZK 38.5
GTEX-UPK5-2026-SM-4JBIM 37.8
GTEX-11NSD-1726-SM-5N9C3 35.5
GTEX-Z9EW-0926-SM-5CVMM 29.3
GTEX-11VI4-1626-SM-5EQKO 28.9
GTEX-VUSG-1726-SM-4KKZL 28.3
GTEX-WFJO-0926-SM-4LVM2 27.6
GTEX-WRHK-1026-SM-4MVOD 27.1
GTEX-11P82-0826-SM-5P9GU 27.1
GTEX-1399U-2126-SM-5IFEZ 24.6
GTEX-11XUK-1426-SM-5EQMG 24.1
GTEX-ZVP2-1726-SM-5GU5P 24.0
GTEX-ZVT2-2126-SM-5NQ93 23.7
GTEX-Y5LM-1626-SM-4VDTB 23.7
GTEX-ZQG8-2526-SM-57WEQ 23.2
GTEX-13FH7-1226-SM-5IJFK 23.0
GTEX-131XG-1726-SM-5LZUR 22.9
GTEX-13O61-1326-SM-5KM31 22.3
GTEX-ZEX8-1826-SM-57WBH 22.0
GTEX-145ME-0926-SM-5O9AR 20.7
GTEX-13111-1426-SM-5DUW3 20.0
GTEX-WH7G-1626-SM-4LVMY 19.2
GTEX-XAJ8-0526-SM-47JYK 18.8
GTEX-ZC5H-2326-SM-4WAYT 18.5
GTEX-14E6E-1626-SM-5RQI7 18.5
GTEX-13RTK-0826-SM-5Q5C6 18.2
GTEX-13FTW-2026-SM-5IJE2 16.9
GTEX-ZLFU-1526-SM-4WWBT 16.8
GTEX-WFG8-1626-SM-4LVMB 16.5
GTEX-1399S-2026-SM-5KM4B 16.4
GTEX-ZP4G-1626-SM-57WGD 16.1
GTEX-VJYA-0926-SM-4KL1N 15.7
GTEX-12BJ1-1926-SM-5HL9Z 14.7
GTEX-ZZ64-0526-SM-5GZXM 14.4
GTEX-11DXX-1626-SM-5H11H 13.8
GTEX-111CU-1326-SM-5NQ8L 13.1
GTEX-13QBU-1926-SM-5IJEW 13.0
GTEX-11EQ9-1326-SM-5985X 12.5
GTEX-ZTPG-2626-SM-57WFX 12.5
GTEX-XBED-1426-SM-4AT4G 12.3
GTEX-139T6-1026-SM-5IJGC 12.2
GTEX-ZPIC-2326-SM-57WDW 12.2
GTEX-13CF3-1226-SM-5LZXN 12.1
GTEX-ZA64-1226-SM-5HL7B 11.6
GTEX-WEY5-1526-SM-4LMJF 11.3
GTEX-11P7K-1626-SM-5GU63 11.3
GTEX-11I78-1126-SM-5A5K5 11.2
GTEX-13113-1226-SM-5EGHT 11.1
GTEX-13O21-1026-SM-5IJDU 11.1
GTEX-148VJ-2226-SM-5NQ9M 11.0
GTEX-XGQ4-1326-SM-4GIDU 10.6
GTEX-ZYWO-1526-SM-5SIAL 10.5
GTEX-139YR-2226-SM-5IFFW 10.4
GTEX-X5EB-1626-SM-4E3IV 10.3
GTEX-WQUQ-2426-SM-4MVNW 9.8
GTEX-13PL7-2626-SM-5IFH4 9.8
GTEX-XXEK-1026-SM-4BRUW 9.6
GTEX-WFG7-1726-SM-4LVME 9.5
GTEX-11DXZ-1326-SM-5H11X 9.0
GTEX-YEC4-1726-SM-4W21E 8.5
GTEX-131XF-1326-SM-5GCMQ 8.4
GTEX-1399R-2026-SM-5K7WN 8.1
GTEX-XMK1-1826-SM-4B66F 8.0
GTEX-133LE-1426-SM-5IFH1 8.0
GTEX-ZLV1-1126-SM-4WWBW 7.9
GTEX-13D11-0726-SM-5LZZB 7.8
GTEX-117YX-0326-SM-5GICL 7.5
GTEX-ZTX8-0526-SM-59HLD 7.5
GTEX-145LT-1026-SM-5LU9O 7.4
GTEX-ZVZP-1826-SM-5GZXB 7.1
GTEX-ZYFG-2026-SM-5E43Y 6.9
GTEX-14DAR-1426-SM-5RQIR 6.7
GTEX-XUZC-1426-SM-4BRV3 6.2
GTEX-Y114-1426-SM-4TT6W 6.0
GTEX-ZTSS-0926-SM-59865 5.7
GTEX-ZXES-1526-SM-5NQ95 5.7
GTEX-YB5E-1526-SM-5IFIE 5.6
GTEX-Y9LG-1626-SM-5IFHM 5.4
GTEX-1192X-2526-SM-59868 5.2
GTEX-ZF2S-1726-SM-57WFT 5.0
GTEX-12WSK-1526-SM-5CVNO 4.8
GTEX-YF7O-1826-SM-5IFIU 4.2
GTEX-Y3IK-1726-SM-4YCCR 4.2
GTEX-13OVI-1926-SM-5IJCG 3.9
GTEX-ZPCL-1726-SM-57WEO 3.7
GTEX-1122O-1326-SM-5H11F 3.7
GTEX-ZQUD-0926-SM-57WE3 3.6
GTEX-111YS-1426-SM-5GID8 2.5
Show all

SMALL INTESTINE - FANTOM5 CAGE

Average Tags Per Million

32.8

FANTOM5 sample id

Sample description

Tags Per Million

Small intestine
Tags Per Million: 32.8
FF:10024-101D6 15,40,85 years, mixed 32.8

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