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TISSUE ATLAS PRIMARY DATA CAUDATE

GENE/PROTEIN

Antibody validation


Dictionary

Caudate

CAUDATE - Expression summary

Protein expression

h
m
l
n

RNA expression

GTEx:51.7RPKM
FANTOM5:187.9Tags Per Million

CAUDATE - Annotated protein expression

Annotated protein
expression

Glial cells:Low
Neuronal cells:High
 

Antibody staining

Antibody HPA042122

 

Antibody HPA042770

 

Glial cells

Low   Not detected  

Neuronal cells

High   Not detected  
   
   
   

CAUDATE - HPA RNA-seq

Pending HPA RNA-seq analysis


CAUDATE - GTEx RNA-seq

Average RPKM

51.7

GTEx sample id

RPKM

 

Brain - Caudate (basal ganglia)

Brain - Caudate (basal ganglia)
RPKM: 51.7
Samples: 117

Max RPKM: 96.6
Min RPKM: 20.2
Std RPKM: 16.2
Median RPKM: 53
GTEX-T2IS-0011-R5A-SM-32QP4 96.6
GTEX-131YS-0011-R5b-SM-5K7YB 90.5
GTEX-T5JC-0011-R5A-SM-32PLK 88.5
GTEX-Q2AG-0011-R5A-SM-2HMJH 85.8
GTEX-13O3Q-0011-R5b-SM-5P9H4 83.6
GTEX-1313W-0011-R5b-SM-5L3EP 82.3
GTEX-13G51-0011-R5a-SM-5L3EB 79.9
GTEX-WHSE-0011-R5A-SM-3P5ZO 79.5
GTEX-R55E-0011-R5A-SM-2TC5N 77.8
GTEX-145MH-0011-R5a-SM-5P9JT 77.1
GTEX-T6MN-0011-R5A-SM-32QPD 76.5
GTEX-12ZZY-0011-R5a-SM-5EGL9 74.8
GTEX-QVJO-0011-R5A-SM-2S1QM 73.5
GTEX-12WSC-0011-R5b-SM-5CVNS 72.1
GTEX-13X6J-0011-R5b-SM-5PNWT 72.1
GTEX-11OF3-0011-R5a-SM-57WB4 71.2
GTEX-WZTO-0011-R5B-SM-3NMC5 71.2
GTEX-WVLH-0011-R5A-SM-3MJFW 70.4
GTEX-S7SE-0011-R5A-SM-2XCDA 68.8
GTEX-ZAB4-0011-R5a-SM-4SOKC 68.8
GTEX-14ABY-0011-R5b-SM-5SI7B 66.8
GTEX-13SLX-0011-R5a-SM-5O9BV 66.6
GTEX-13OW6-0011-R5a-SM-5O9BK 65.9
GTEX-11GSP-0011-R5a-SM-57WBE 64.7
GTEX-PVOW-0011-R5A-SM-32PL7 63.1
GTEX-13NYB-0011-R5a-SM-5MR45 62.8
GTEX-WL46-0011-R5A-SM-3LK6V 62.4
GTEX-14BIM-0011-R5b-SM-5S2RM 61.9
GTEX-12WSM-0011-R5a-SM-5EQ4Y 61.7
GTEX-ZUA1-0011-R5b-SM-51MTG 61.2
GTEX-13OVL-0011-R5b-SM-5L3FU 60.5
GTEX-UTHO-0011-R5A-SM-3GIJD 60.0
GTEX-13OVJ-0011-R5a-SM-5P9H7 59.8
GTEX-139TT-0011-R5b-SM-5K7W8 59.2
GTEX-13FLW-0011-R5a-SM-5LZX6 58.7
GTEX-1399T-0011-R5b-SM-5IJDK 58.3
GTEX-13FXS-0011-R5b-SM-5LZYE 58.1
GTEX-145LS-0011-R5a-SM-5SI65 57.4
GTEX-12ZZX-0011-R5a-SM-5HL89 57.0
GTEX-P44H-0011-R5A-SM-2XCEX 56.6
GTEX-RU72-0011-R5A-SM-2TF6U 56.6
GTEX-13OW7-0011-R5b-SM-5O9DM 56.3
GTEX-Y8DK-0011-R5B-SM-4RTW6 56.1
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 55.7
GTEX-11H98-0011-R5b-SM-57WCF 55.4
GTEX-13RTJ-0011-R5a-SM-5P9HR 55.4
GTEX-13JUV-0011-R5a-SM-5LZY5 55.0
GTEX-N7MT-0011-R5a-SM-2I3G6 55.0
GTEX-144GO-0011-R5a-SM-5PNUR 54.7
GTEX-N7MS-0011-R5a-SM-2HMK8 54.4
GTEX-NL4W-0011-R5a-SM-2I3GD 54.3
GTEX-13FHO-0011-R5b-SM-5LZZ3 54.2
GTEX-13OW5-0011-R5b-SM-5L3FR 54.0
GTEX-13X6K-0011-R5b-SM-5PNUE 54.0
GTEX-13VXU-0011-R5a-SM-5O9D7 53.6
GTEX-ZE9C-0011-R5a-SM-5EGLO 53.6
GTEX-13FLV-0011-R5a-SM-5LZWT 53.5
GTEX-11NV4-0011-R5a-SM-5NQ88 53.3
GTEX-12WSB-0011-R5b-SM-5GU67 53.0
GTEX-13N1W-0011-R5b-SM-5MR5Q 52.7
GTEX-WWYW-0011-R5A-SM-3NB3E 52.1
GTEX-13O3O-0011-R5b-SM-5KM44 52.0
GTEX-ZVZQ-0011-R5b-SM-57WDC 51.0
GTEX-13CZV-0011-R5a-SM-5K7XA 50.1
GTEX-12WSF-0011-R5a-SM-5HL8K 49.7
GTEX-12WSD-0011-R5b-SM-5CVNG 49.4
GTEX-13X6I-0011-R5a-SM-5PNWW 48.9
GTEX-13S7M-0011-R5b-SM-5P9HS 48.7
GTEX-11UD1-0011-R5b-SM-5P9FP 47.6
GTEX-11WQC-0011-R5a-SM-5BC74 46.7
GTEX-13JVG-0011-R5a-SM-5MR4O 46.2
GTEX-13OW8-0011-R5b-SM-5L3FQ 45.8
GTEX-13NYS-0011-R5a-SM-5MR4D 44.5
GTEX-13OVH-0011-R5b-SM-5KM4L 44.4
GTEX-X4XX-0011-R5A-SM-46MWN 44.2
GTEX-Z93S-0011-R5b-SM-4RGNI 44.1
GTEX-ZE7O-0011-R5a-SM-57WBO 43.9
GTEX-ZXG5-0011-R5b-SM-57WBN 42.3
GTEX-1445S-0011-R5a-SM-5PNUS 42.1
GTEX-YFC4-0011-R5a-SM-4RGLR 41.7
GTEX-12ZZW-0011-R5a-SM-5DUVN 41.6
GTEX-ZV68-0011-R5a-SM-4YCDW 41.5
GTEX-14BIN-0011-R5b-SM-5SI78 39.7
GTEX-XMD1-0011-R5A-SM-4AT47 39.6
GTEX-NL3H-0011-R5a-SM-2I3GB 39.4
GTEX-XOTO-0011-R5A-SM-4B657 39.3
GTEX-X585-0011-R5A-SM-46MVI 38.9
GTEX-13PVQ-0011-R5b-SM-5O9DI 37.8
GTEX-X261-0011-R5A-SM-3NMB4 37.6
GTEX-NPJ8-0011-R5a-SM-2HMJY 37.5
GTEX-13SLW-0011-R5b-SM-5SI6Z 37.4
GTEX-13PLJ-0011-R5a-SM-5O9BG 36.4
GTEX-13112-0011-R5b-SM-5DUV8 36.2
GTEX-TSE9-0011-R5A-SM-3DB7J 36.1
GTEX-13FHP-0011-R5b-SM-5LZY2 36.0
GTEX-12WSA-0011-R5b-SM-5GU5I 35.3
GTEX-OXRN-0011-R5A-SM-2I5EF 35.3
GTEX-132Q8-0011-R5a-SM-5IJDM 35.1
GTEX-ZVT3-0011-R5a-SM-51MSI 34.9
GTEX-QMR6-0011-R5A-SM-32PKT 34.6
GTEX-RVPU-0011-R5A-SM-2XCAD 34.2
GTEX-ZF28-0011-R5a-SM-4WWCZ 32.8
GTEX-139TS-0011-R5b-SM-5J2MZ 32.7
GTEX-YJ89-0011-R5a-SM-4V6GM 32.5
GTEX-RVPV-0011-R5A-SM-2TF69 32.0
GTEX-PWO3-0011-R5A-SM-2I5EZ 31.7
GTEX-13CIG-0011-R5b-SM-5L3F2 31.2
GTEX-144GL-0011-R5b-SM-5PNUJ 31.1
GTEX-S7PM-0011-R5A-SM-3NM8G 30.9
GTEX-NPJ7-0011-R5a-SM-33HBK 30.6
GTEX-145MG-0011-R5b-SM-5S2VU 29.4
GTEX-12WSH-0011-R5b-SM-5P9F3 27.4
GTEX-13CF2-0011-R5a-SM-5LZWS 27.0
GTEX-OHPN-0011-R5A-SM-2I5FF 27.0
GTEX-1477Z-0011-R5b-SM-5PNUO 22.7
GTEX-13NZA-0011-R5b-SM-5KM4K 21.4
GTEX-139T8-0011-R5b-SM-5J1MO 20.2
Show all

CAUDATE - FANTOM5 CAGE

Average Tags Per Million

187.9

FANTOM5 sample id

Sample description

Tags Per Million

Caudate nucleus
Tags Per Million: 187.9
FF:10164-103B2 76 years, female 200.1
FF:10379-105H1 89 years, female 175.7

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