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TISSUE ATLAS PRIMARY DATA CAUDATE

GENE/PROTEIN

Antibody validation


Dictionary

Caudate

CAUDATE - Expression summary

Protein expression

h
m
l
n

RNA expression

GTEx:17.5RPKM
FANTOM5:62.8Tags Per Million

CAUDATE - Annotated protein expression

Annotated protein
expression

Glial cells:Low
Neuronal cells:Not detected
 

Antibody staining

Antibody HPA024190

 

Antibody HPA024637

 

Antibody HPA046329

 

Antibody CAB004666

 

Glial cells

Not detected   Low   Not detected   Not detected  

Neuronal cells

Not detected   Not detected   Not detected   Low  
       
       
       

CAUDATE - HPA RNA-seq

Pending HPA RNA-seq analysis


CAUDATE - GTEx RNA-seq

Average RPKM

17.5

GTEx sample id

RPKM

 

Brain - Caudate (basal ganglia)

Brain - Caudate (basal ganglia)
RPKM: 17.5
Samples: 117

Max RPKM: 30.6
Min RPKM: 6.9
Std RPKM: 4.4
Median RPKM: 17.6
GTEX-13JVG-0011-R5a-SM-5MR4O 30.6
GTEX-12WSB-0011-R5b-SM-5GU67 28.6
GTEX-13OVJ-0011-R5a-SM-5P9H7 28.5
GTEX-13FLV-0011-R5a-SM-5LZWT 28.4
GTEX-12WSA-0011-R5b-SM-5GU5I 26.6
GTEX-11GSP-0011-R5a-SM-57WBE 24.8
GTEX-T6MN-0011-R5A-SM-32QPD 24.2
GTEX-WVLH-0011-R5A-SM-3MJFW 23.6
GTEX-13SLW-0011-R5b-SM-5SI6Z 22.9
GTEX-ZVZQ-0011-R5b-SM-57WDC 22.9
GTEX-13NYS-0011-R5a-SM-5MR4D 22.5
GTEX-1445S-0011-R5a-SM-5PNUS 22.5
GTEX-13OW8-0011-R5b-SM-5L3FQ 22.4
GTEX-144GO-0011-R5a-SM-5PNUR 22.2
GTEX-ZAB4-0011-R5a-SM-4SOKC 22.1
GTEX-13JUV-0011-R5a-SM-5LZY5 21.6
GTEX-NL3H-0011-R5a-SM-2I3GB 21.6
GTEX-X261-0011-R5A-SM-3NMB4 21.6
GTEX-Y8DK-0011-R5B-SM-4RTW6 21.6
GTEX-139TT-0011-R5b-SM-5K7W8 21.5
GTEX-XMD1-0011-R5A-SM-4AT47 21.5
GTEX-PWO3-0011-R5A-SM-2I5EZ 21.4
GTEX-RU72-0011-R5A-SM-2TF6U 21.2
GTEX-13OW6-0011-R5a-SM-5O9BK 21.1
GTEX-13OW7-0011-R5b-SM-5O9DM 21.0
GTEX-11H98-0011-R5b-SM-57WCF 20.8
GTEX-13X6K-0011-R5b-SM-5PNUE 20.7
GTEX-13CIG-0011-R5b-SM-5L3F2 20.6
GTEX-13X6I-0011-R5a-SM-5PNWW 20.3
GTEX-13CZV-0011-R5a-SM-5K7XA 20.1
GTEX-NL4W-0011-R5a-SM-2I3GD 20.1
GTEX-QVJO-0011-R5A-SM-2S1QM 20.0
GTEX-132Q8-0011-R5a-SM-5IJDM 19.9
GTEX-13NYB-0011-R5a-SM-5MR45 19.8
GTEX-13RTJ-0011-R5a-SM-5P9HR 19.7
GTEX-ZUA1-0011-R5b-SM-51MTG 19.7
GTEX-R55E-0011-R5A-SM-2TC5N 19.5
GTEX-T5JC-0011-R5A-SM-32PLK 19.5
GTEX-TSE9-0011-R5A-SM-3DB7J 19.4
GTEX-12ZZX-0011-R5a-SM-5HL89 19.3
GTEX-13OW5-0011-R5b-SM-5L3FR 19.2
GTEX-ZE7O-0011-R5a-SM-57WBO 19.2
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 19.1
GTEX-13OVL-0011-R5b-SM-5L3FU 19.1
GTEX-N7MT-0011-R5a-SM-2I3G6 19.0
GTEX-13SLX-0011-R5a-SM-5O9BV 18.9
GTEX-13PVQ-0011-R5b-SM-5O9DI 18.5
GTEX-P44H-0011-R5A-SM-2XCEX 18.5
GTEX-S7SE-0011-R5A-SM-2XCDA 18.5
GTEX-WWYW-0011-R5A-SM-3NB3E 18.5
GTEX-XOTO-0011-R5A-SM-4B657 18.3
GTEX-ZV68-0011-R5a-SM-4YCDW 18.3
GTEX-OHPN-0011-R5A-SM-2I5FF 18.2
GTEX-Q2AG-0011-R5A-SM-2HMJH 18.2
GTEX-12ZZW-0011-R5a-SM-5DUVN 17.9
GTEX-13FLW-0011-R5a-SM-5LZX6 17.8
GTEX-144GL-0011-R5b-SM-5PNUJ 17.6
GTEX-OXRN-0011-R5A-SM-2I5EF 17.6
GTEX-ZVT3-0011-R5a-SM-51MSI 17.6
GTEX-WZTO-0011-R5B-SM-3NMC5 17.4
GTEX-14BIM-0011-R5b-SM-5S2RM 17.3
GTEX-YFC4-0011-R5a-SM-4RGLR 17.3
GTEX-13G51-0011-R5a-SM-5L3EB 17.1
GTEX-13N1W-0011-R5b-SM-5MR5Q 17.0
GTEX-131YS-0011-R5b-SM-5K7YB 16.9
GTEX-ZE9C-0011-R5a-SM-5EGLO 16.9
GTEX-NPJ7-0011-R5a-SM-33HBK 16.8
GTEX-13FHO-0011-R5b-SM-5LZZ3 16.7
GTEX-NPJ8-0011-R5a-SM-2HMJY 16.7
GTEX-13112-0011-R5b-SM-5DUV8 16.4
GTEX-11WQC-0011-R5a-SM-5BC74 16.3
GTEX-12WSM-0011-R5a-SM-5EQ4Y 16.3
GTEX-13OVH-0011-R5b-SM-5KM4L 16.1
GTEX-ZXG5-0011-R5b-SM-57WBN 16.1
GTEX-139TS-0011-R5b-SM-5J2MZ 16.0
GTEX-14ABY-0011-R5b-SM-5SI7B 15.8
GTEX-12ZZY-0011-R5a-SM-5EGL9 15.7
GTEX-13O3Q-0011-R5b-SM-5P9H4 15.7
GTEX-X4XX-0011-R5A-SM-46MWN 15.4
GTEX-139T8-0011-R5b-SM-5J1MO 15.3
GTEX-13FXS-0011-R5b-SM-5LZYE 15.1
GTEX-QMR6-0011-R5A-SM-32PKT 15.1
GTEX-13X6J-0011-R5b-SM-5PNWT 15.0
GTEX-N7MS-0011-R5a-SM-2HMK8 15.0
GTEX-UTHO-0011-R5A-SM-3GIJD 14.8
GTEX-11UD1-0011-R5b-SM-5P9FP 14.6
GTEX-ZF28-0011-R5a-SM-4WWCZ 14.6
GTEX-13VXU-0011-R5a-SM-5O9D7 14.5
GTEX-14BIN-0011-R5b-SM-5SI78 14.2
GTEX-13CF2-0011-R5a-SM-5LZWS 14.1
GTEX-12WSD-0011-R5b-SM-5CVNG 14.0
GTEX-12WSC-0011-R5b-SM-5CVNS 13.9
GTEX-1313W-0011-R5b-SM-5L3EP 13.9
GTEX-RVPV-0011-R5A-SM-2TF69 13.8
GTEX-11OF3-0011-R5a-SM-57WB4 13.7
GTEX-13S7M-0011-R5b-SM-5P9HS 13.4
GTEX-145LS-0011-R5a-SM-5SI65 13.3
GTEX-13O3O-0011-R5b-SM-5KM44 13.1
GTEX-YJ89-0011-R5a-SM-4V6GM 13.1
GTEX-S7PM-0011-R5A-SM-3NM8G 13.0
GTEX-13PLJ-0011-R5a-SM-5O9BG 12.9
GTEX-PVOW-0011-R5A-SM-32PL7 12.8
GTEX-T2IS-0011-R5A-SM-32QP4 12.7
GTEX-145MG-0011-R5b-SM-5S2VU 12.6
GTEX-145MH-0011-R5a-SM-5P9JT 12.4
GTEX-11NV4-0011-R5a-SM-5NQ88 12.3
GTEX-1399T-0011-R5b-SM-5IJDK 12.0
GTEX-RVPU-0011-R5A-SM-2XCAD 11.8
GTEX-WHSE-0011-R5A-SM-3P5ZO 11.2
GTEX-12WSF-0011-R5a-SM-5HL8K 10.6
GTEX-13NZA-0011-R5b-SM-5KM4K 10.1
GTEX-13FHP-0011-R5b-SM-5LZY2 9.4
GTEX-X585-0011-R5A-SM-46MVI 9.2
GTEX-1477Z-0011-R5b-SM-5PNUO 9.1
GTEX-12WSH-0011-R5b-SM-5P9F3 8.2
GTEX-WL46-0011-R5A-SM-3LK6V 7.4
GTEX-Z93S-0011-R5b-SM-4RGNI 6.9
Show all

CAUDATE - FANTOM5 CAGE

Average Tags Per Million

62.8

FANTOM5 sample id

Sample description

Tags Per Million

Caudate nucleus
Tags Per Million: 62.8
FF:10379-105H1 89 years, female 65.7
FF:10164-103B2 76 years, female 59.9

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