We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
Fields »
 

Field

Term
Gene name

Class

Subclass

Chromosome

External id

In atlas

Reliability

Reliability

Reliability

Validation

Method

Validation

Method

Validation

Method

Validation

Location

Searches

Tissue

Cell type

Expression

Tissue

Specificity

Cell line

Specificity

Tissue

Detectable

Cell line

Detectable

Category

Score

Score

Score

Antibodies

Column

 
 
ABOUT
HELP
BLOG
  • THE HUMAN PROTEOME
  • THE HUMAN TISSUES
  • THE HUMAN CELL
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
    • NEWS
    • BLOG
    • EVENTS
    • PRESS ROOM
    • LEARN
    • DICTIONARY
    • METHODS
    • CELL LINES
  • THE PROJECT
  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS
  • PUBLICATION DATA
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • LINKS
  • CONTACT
  • TECHNICAL DATA
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • DOWNLOADABLE DATA
  • HELP & FAQ
  • LICENCE & CITATION
  • PRIVACY STATEMENT
  • RELEASE HISTORY
AARS
  • premium

    TISSUE

  • premium

    CELL

  • CANCER

TISSUE ATLAS PRIMARY DATA CAUDATE

GENE/PROTEIN

Antibody validation


Dictionary

Caudate

CAUDATE - Expression summary

Protein expression

h
m
l
n

RNA expression

GTEx:49.7RPKM
FANTOM5:156.4Tags Per Million

CAUDATE - Annotated protein expression

Annotated protein
expression

Glial cells:Not detected
Neuronal cells:Medium
 

Antibody staining

Antibody HPA040870

 

Antibody CAB034261

 

Glial cells

Not detected   Not detected  

Neuronal cells

Medium   Medium  
   
   
   

CAUDATE - HPA RNA-seq

Pending HPA RNA-seq analysis


CAUDATE - GTEx RNA-seq

Average RPKM

49.7

GTEx sample id

RPKM

40.551.260.315.683.001020304050607080
 
40.551.260.315.683.001020304050607080

Brain - Caudate (basal ganglia)

Brain - Caudate (basal ganglia)
RPKM: 49.7
Samples: 117

Max RPKM: 83
Min RPKM: 15.6
Std RPKM: 14
Median RPKM: 51.2
GTEX-13G51-0011-R5a-SM-5L3EB 83.0
GTEX-X585-0011-R5A-SM-46MVI 81.3
GTEX-131YS-0011-R5b-SM-5K7YB 73.4
GTEX-WWYW-0011-R5A-SM-3NB3E 72.3
GTEX-13RTJ-0011-R5a-SM-5P9HR 72.0
GTEX-13NYS-0011-R5a-SM-5MR4D 71.6
GTEX-N7MT-0011-R5a-SM-2I3G6 71.2
GTEX-X4XX-0011-R5A-SM-46MWN 70.7
GTEX-14BIM-0011-R5b-SM-5S2RM 67.9
GTEX-Q2AG-0011-R5A-SM-2HMJH 66.9
GTEX-1399T-0011-R5b-SM-5IJDK 66.5
GTEX-13O3Q-0011-R5b-SM-5P9H4 66.3
GTEX-132Q8-0011-R5a-SM-5IJDM 65.4
GTEX-12WSC-0011-R5b-SM-5CVNS 64.9
GTEX-N7MS-0011-R5a-SM-2HMK8 64.9
GTEX-T6MN-0011-R5A-SM-32QPD 64.7
GTEX-ZAB4-0011-R5a-SM-4SOKC 64.6
GTEX-QVJO-0011-R5A-SM-2S1QM 63.7
GTEX-WHSE-0011-R5A-SM-3P5ZO 63.7
GTEX-12ZZY-0011-R5a-SM-5EGL9 63.5
GTEX-UTHO-0011-R5A-SM-3GIJD 63.5
GTEX-145MH-0011-R5a-SM-5P9JT 62.8
GTEX-13X6K-0011-R5b-SM-5PNUE 62.7
GTEX-WZTO-0011-R5B-SM-3NMC5 62.7
GTEX-13SLX-0011-R5a-SM-5O9BV 62.2
GTEX-11GSP-0011-R5a-SM-57WBE 61.7
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60.6
GTEX-WL46-0011-R5A-SM-3LK6V 60.5
GTEX-145LS-0011-R5a-SM-5SI65 60.4
GTEX-13FHO-0011-R5b-SM-5LZZ3 60.3
GTEX-13X6I-0011-R5a-SM-5PNWW 60.3
GTEX-S7SE-0011-R5A-SM-2XCDA 60.3
GTEX-ZUA1-0011-R5b-SM-51MTG 60.3
GTEX-1313W-0011-R5b-SM-5L3EP 59.0
GTEX-WVLH-0011-R5A-SM-3MJFW 57.8
GTEX-13N1W-0011-R5b-SM-5MR5Q 57.2
GTEX-RU72-0011-R5A-SM-2TF6U 57.1
GTEX-13OW6-0011-R5a-SM-5O9BK 57.0
GTEX-13JUV-0011-R5a-SM-5LZY5 56.9
GTEX-13VXU-0011-R5a-SM-5O9D7 56.7
GTEX-13X6J-0011-R5b-SM-5PNWT 56.4
GTEX-13OW8-0011-R5b-SM-5L3FQ 55.3
GTEX-R55E-0011-R5A-SM-2TC5N 55.2
GTEX-13OW5-0011-R5b-SM-5L3FR 55.0
GTEX-13FLV-0011-R5a-SM-5LZWT 54.2
GTEX-13OVL-0011-R5b-SM-5L3FU 53.8
GTEX-NPJ8-0011-R5a-SM-2HMJY 53.8
GTEX-Y8DK-0011-R5B-SM-4RTW6 53.6
GTEX-NL3H-0011-R5a-SM-2I3GB 53.4
GTEX-11H98-0011-R5b-SM-57WCF 52.9
GTEX-13S7M-0011-R5b-SM-5P9HS 52.9
GTEX-RVPV-0011-R5A-SM-2TF69 52.6
GTEX-14ABY-0011-R5b-SM-5SI7B 52.5
GTEX-13FXS-0011-R5b-SM-5LZYE 52.3
GTEX-12WSB-0011-R5b-SM-5GU67 51.9
GTEX-13NYB-0011-R5a-SM-5MR45 51.7
GTEX-TSE9-0011-R5A-SM-3DB7J 51.7
GTEX-139TT-0011-R5b-SM-5K7W8 51.6
GTEX-T5JC-0011-R5A-SM-32PLK 51.2
GTEX-T2IS-0011-R5A-SM-32QP4 51.1
GTEX-12WSF-0011-R5a-SM-5HL8K 50.8
GTEX-11OF3-0011-R5a-SM-57WB4 50.1
GTEX-NL4W-0011-R5a-SM-2I3GD 50.1
GTEX-13O3O-0011-R5b-SM-5KM44 49.9
GTEX-11NV4-0011-R5a-SM-5NQ88 49.7
GTEX-13CIG-0011-R5b-SM-5L3F2 49.2
GTEX-PVOW-0011-R5A-SM-32PL7 48.9
GTEX-Z93S-0011-R5b-SM-4RGNI 48.8
GTEX-13JVG-0011-R5a-SM-5MR4O 48.0
GTEX-13FLW-0011-R5a-SM-5LZX6 47.9
GTEX-ZE9C-0011-R5a-SM-5EGLO 47.9
GTEX-P44H-0011-R5A-SM-2XCEX 47.6
GTEX-144GO-0011-R5a-SM-5PNUR 46.7
GTEX-13SLW-0011-R5b-SM-5SI6Z 46.6
GTEX-XMD1-0011-R5A-SM-4AT47 46.5
GTEX-12WSA-0011-R5b-SM-5GU5I 46.2
GTEX-13OW7-0011-R5b-SM-5O9DM 45.7
GTEX-12WSM-0011-R5a-SM-5EQ4Y 45.3
GTEX-XOTO-0011-R5A-SM-4B657 44.4
GTEX-13OVJ-0011-R5a-SM-5P9H7 44.0
GTEX-ZVZQ-0011-R5b-SM-57WDC 43.7
GTEX-13OVH-0011-R5b-SM-5KM4L 42.9
GTEX-OHPN-0011-R5A-SM-2I5FF 42.6
GTEX-ZF28-0011-R5a-SM-4WWCZ 41.9
GTEX-ZE7O-0011-R5a-SM-57WBO 41.7
GTEX-13CZV-0011-R5a-SM-5K7XA 41.3
GTEX-X261-0011-R5A-SM-3NMB4 41.1
GTEX-12ZZX-0011-R5a-SM-5HL89 40.5
GTEX-YFC4-0011-R5a-SM-4RGLR 40.2
GTEX-RVPU-0011-R5A-SM-2XCAD 40.1
GTEX-ZXG5-0011-R5b-SM-57WBN 40.0
GTEX-PWO3-0011-R5A-SM-2I5EZ 39.8
GTEX-OXRN-0011-R5A-SM-2I5EF 37.3
GTEX-12WSD-0011-R5b-SM-5CVNG 36.5
GTEX-12ZZW-0011-R5a-SM-5DUVN 35.7
GTEX-QMR6-0011-R5A-SM-32PKT 35.7
GTEX-13PVQ-0011-R5b-SM-5O9DI 34.9
GTEX-14BIN-0011-R5b-SM-5SI78 34.6
GTEX-1445S-0011-R5a-SM-5PNUS 33.8
GTEX-139TS-0011-R5b-SM-5J2MZ 32.9
GTEX-13PLJ-0011-R5a-SM-5O9BG 32.2
GTEX-13112-0011-R5b-SM-5DUV8 31.5
GTEX-ZVT3-0011-R5a-SM-51MSI 30.2
GTEX-144GL-0011-R5b-SM-5PNUJ 29.9
GTEX-12WSH-0011-R5b-SM-5P9F3 29.5
GTEX-ZV68-0011-R5a-SM-4YCDW 27.6
GTEX-11WQC-0011-R5a-SM-5BC74 26.7
GTEX-YJ89-0011-R5a-SM-4V6GM 26.4
GTEX-11UD1-0011-R5b-SM-5P9FP 26.3
GTEX-139T8-0011-R5b-SM-5J1MO 26.2
GTEX-NPJ7-0011-R5a-SM-33HBK 25.7
GTEX-13CF2-0011-R5a-SM-5LZWS 25.2
GTEX-S7PM-0011-R5A-SM-3NM8G 23.7
GTEX-13FHP-0011-R5b-SM-5LZY2 23.2
GTEX-1477Z-0011-R5b-SM-5PNUO 20.3
GTEX-145MG-0011-R5b-SM-5S2VU 19.2
GTEX-13NZA-0011-R5b-SM-5KM4K 15.6
Show all

CAUDATE - FANTOM5 CAGE

Average Tags Per Million

156.4

FANTOM5 sample id

Sample description

Tags Per Million

Caudate nucleus
Tags Per Million: 156.4
FF:10379-105H1 89 years, female 171.1
FF:10164-103B2 76 years, female 141.7

Contact

  • BLOG
  • PRESS ROOM
  • contact@proteinatlas.org

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS
  • DOWNLOADABLE DATA

The Human Protein Atlas

  • ANTIBODY AVAILABILITY
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.