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TISSUE ATLAS PRIMARY DATA CAUDATE

GENE/PROTEIN

Antibody validation


Dictionary

Caudate

CAUDATE - Expression summary

Protein expression

h
m
l
n

RNA expression

GTEx:58.8RPKM
FANTOM5:91.0Tags Per Million

CAUDATE - Annotated protein expression

Annotated protein
expression

Glial cells:High
Neuronal cells:Not detected
 

Antibody staining

Antibody HPA021616

 

Antibody CAB004035

 

Antibody CAB047324

 

Glial cells

High   Medium   High  

Neuronal cells

Not detected   Not detected   Medium  
     
     
     

CAUDATE - HPA RNA-seq

Pending HPA RNA-seq analysis


CAUDATE - GTEx RNA-seq

Average RPKM

58.8

GTEx sample id

RPKM

 

Brain - Caudate (basal ganglia)

Brain - Caudate (basal ganglia)
RPKM: 58.8
Samples: 117

Max RPKM: 110.4
Min RPKM: 13.8
Std RPKM: 17.7
Median RPKM: 57.1
GTEX-13OW6-0011-R5a-SM-5O9BK 110.4
GTEX-139TS-0011-R5b-SM-5J2MZ 109.4
GTEX-13FLV-0011-R5a-SM-5LZWT 99.6
GTEX-144GO-0011-R5a-SM-5PNUR 96.0
GTEX-13SLW-0011-R5b-SM-5SI6Z 93.8
GTEX-11GSP-0011-R5a-SM-57WBE 92.6
GTEX-12WSB-0011-R5b-SM-5GU67 91.9
GTEX-NL3H-0011-R5a-SM-2I3GB 90.5
GTEX-13OW8-0011-R5b-SM-5L3FQ 89.4
GTEX-13PLJ-0011-R5a-SM-5O9BG 88.0
GTEX-XMD1-0011-R5A-SM-4AT47 87.5
GTEX-ZVZQ-0011-R5b-SM-57WDC 83.0
GTEX-Y8DK-0011-R5B-SM-4RTW6 82.4
GTEX-RU72-0011-R5A-SM-2TF6U 82.1
GTEX-12WSA-0011-R5b-SM-5GU5I 80.1
GTEX-ZE7O-0011-R5a-SM-57WBO 79.6
GTEX-13OVJ-0011-R5a-SM-5P9H7 78.5
GTEX-13JVG-0011-R5a-SM-5MR4O 76.1
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 75.8
GTEX-1445S-0011-R5a-SM-5PNUS 74.6
GTEX-T6MN-0011-R5A-SM-32QPD 74.3
GTEX-13JUV-0011-R5a-SM-5LZY5 71.6
GTEX-WVLH-0011-R5A-SM-3MJFW 70.8
GTEX-ZV68-0011-R5a-SM-4YCDW 70.1
GTEX-13CIG-0011-R5b-SM-5L3F2 69.7
GTEX-R55E-0011-R5A-SM-2TC5N 69.7
GTEX-X261-0011-R5A-SM-3NMB4 69.6
GTEX-S7SE-0011-R5A-SM-2XCDA 69.4
GTEX-13OW7-0011-R5b-SM-5O9DM 68.7
GTEX-13OVL-0011-R5b-SM-5L3FU 67.5
GTEX-YFC4-0011-R5a-SM-4RGLR 67.3
GTEX-NPJ8-0011-R5a-SM-2HMJY 66.7
GTEX-13PVQ-0011-R5b-SM-5O9DI 65.0
GTEX-13G51-0011-R5a-SM-5L3EB 64.4
GTEX-ZE9C-0011-R5a-SM-5EGLO 64.3
GTEX-ZVT3-0011-R5a-SM-51MSI 64.2
GTEX-11WQC-0011-R5a-SM-5BC74 63.9
GTEX-QVJO-0011-R5A-SM-2S1QM 63.1
GTEX-WHSE-0011-R5A-SM-3P5ZO 62.9
GTEX-139TT-0011-R5b-SM-5K7W8 62.7
GTEX-OHPN-0011-R5A-SM-2I5FF 62.0
GTEX-RVPV-0011-R5A-SM-2TF69 61.6
GTEX-11H98-0011-R5b-SM-57WCF 61.5
GTEX-13OW5-0011-R5b-SM-5L3FR 61.5
GTEX-PWO3-0011-R5A-SM-2I5EZ 60.7
GTEX-13N1W-0011-R5b-SM-5MR5Q 60.3
GTEX-12ZZX-0011-R5a-SM-5HL89 60.1
GTEX-S7PM-0011-R5A-SM-3NM8G 59.6
GTEX-13CF2-0011-R5a-SM-5LZWS 59.5
GTEX-13VXU-0011-R5a-SM-5O9D7 59.3
GTEX-12WSD-0011-R5b-SM-5CVNG 59.0
GTEX-11OF3-0011-R5a-SM-57WB4 58.9
GTEX-13NYS-0011-R5a-SM-5MR4D 58.9
GTEX-OXRN-0011-R5A-SM-2I5EF 58.1
GTEX-Q2AG-0011-R5A-SM-2HMJH 58.0
GTEX-TSE9-0011-R5A-SM-3DB7J 57.5
GTEX-132Q8-0011-R5a-SM-5IJDM 57.3
GTEX-13X6I-0011-R5a-SM-5PNWW 57.3
GTEX-12ZZY-0011-R5a-SM-5EGL9 57.1
GTEX-XOTO-0011-R5A-SM-4B657 57.0
GTEX-ZAB4-0011-R5a-SM-4SOKC 56.9
GTEX-NL4W-0011-R5a-SM-2I3GD 56.8
GTEX-12WSM-0011-R5a-SM-5EQ4Y 56.4
GTEX-13NYB-0011-R5a-SM-5MR45 56.1
GTEX-131YS-0011-R5b-SM-5K7YB 55.9
GTEX-1399T-0011-R5b-SM-5IJDK 55.9
GTEX-145MG-0011-R5b-SM-5S2VU 55.5
GTEX-13112-0011-R5b-SM-5DUV8 54.1
GTEX-13SLX-0011-R5a-SM-5O9BV 53.7
GTEX-13FLW-0011-R5a-SM-5LZX6 53.1
GTEX-P44H-0011-R5A-SM-2XCEX 53.0
GTEX-13X6K-0011-R5b-SM-5PNUE 52.9
GTEX-13RTJ-0011-R5a-SM-5P9HR 52.6
GTEX-11UD1-0011-R5b-SM-5P9FP 52.5
GTEX-144GL-0011-R5b-SM-5PNUJ 52.5
GTEX-WZTO-0011-R5B-SM-3NMC5 52.3
GTEX-ZXG5-0011-R5b-SM-57WBN 52.3
GTEX-14BIN-0011-R5b-SM-5SI78 51.9
GTEX-12ZZW-0011-R5a-SM-5DUVN 51.5
GTEX-WWYW-0011-R5A-SM-3NB3E 51.5
GTEX-N7MT-0011-R5a-SM-2I3G6 51.3
GTEX-13CZV-0011-R5a-SM-5K7XA 51.0
GTEX-13O3Q-0011-R5b-SM-5P9H4 50.6
GTEX-13FXS-0011-R5b-SM-5LZYE 49.9
GTEX-14BIM-0011-R5b-SM-5S2RM 49.5
GTEX-14ABY-0011-R5b-SM-5SI7B 49.2
GTEX-13OVH-0011-R5b-SM-5KM4L 48.9
GTEX-ZUA1-0011-R5b-SM-51MTG 48.7
GTEX-T5JC-0011-R5A-SM-32PLK 48.3
GTEX-13X6J-0011-R5b-SM-5PNWT 48.1
GTEX-13FHO-0011-R5b-SM-5LZZ3 47.8
GTEX-N7MS-0011-R5a-SM-2HMK8 47.4
GTEX-145LS-0011-R5a-SM-5SI65 46.3
GTEX-YJ89-0011-R5a-SM-4V6GM 45.9
GTEX-13NZA-0011-R5b-SM-5KM4K 45.8
GTEX-PVOW-0011-R5A-SM-32PL7 45.6
GTEX-12WSC-0011-R5b-SM-5CVNS 44.8
GTEX-13S7M-0011-R5b-SM-5P9HS 44.2
GTEX-RVPU-0011-R5A-SM-2XCAD 43.5
GTEX-ZF28-0011-R5a-SM-4WWCZ 43.3
GTEX-X4XX-0011-R5A-SM-46MWN 43.0
GTEX-UTHO-0011-R5A-SM-3GIJD 42.5
GTEX-1313W-0011-R5b-SM-5L3EP 41.0
GTEX-1477Z-0011-R5b-SM-5PNUO 39.9
GTEX-13O3O-0011-R5b-SM-5KM44 39.6
GTEX-QMR6-0011-R5A-SM-32PKT 38.2
GTEX-NPJ7-0011-R5a-SM-33HBK 36.2
GTEX-145MH-0011-R5a-SM-5P9JT 35.8
GTEX-13FHP-0011-R5b-SM-5LZY2 33.4
GTEX-12WSF-0011-R5a-SM-5HL8K 33.1
GTEX-12WSH-0011-R5b-SM-5P9F3 32.3
GTEX-11NV4-0011-R5a-SM-5NQ88 31.6
GTEX-139T8-0011-R5b-SM-5J1MO 30.3
GTEX-T2IS-0011-R5A-SM-32QP4 23.7
GTEX-WL46-0011-R5A-SM-3LK6V 21.2
GTEX-X585-0011-R5A-SM-46MVI 18.5
GTEX-Z93S-0011-R5b-SM-4RGNI 13.8
Show all

CAUDATE - FANTOM5 CAGE

Average Tags Per Million

91.0

FANTOM5 sample id

Sample description

Tags Per Million

Caudate nucleus
Tags Per Million: 91.0
FF:10164-103B2 76 years, female 114.1
FF:10379-105H1 89 years, female 68.0

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