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HDAC6

COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:17.5TPM
GTEx:18.6RPKM
FANTOM5:21.5Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Not detected
Glandular cells:Medium
Peripheral nerve/ganglion:Medium
 

Antibody staining

Antibody HPA003714

  

Antibody HPA026321

  

Antibody CAB004236

  

Endothelial cells

 Not detected   Not detected   Not detected  

Glandular cells

 Low   Medium   Medium  

Peripheral nerve/ganglion

 Not detected   Low   Medium  
     
     
     

COLON - HPA RNA-seq

Average TPM

17.5
overview Male, age 54
Sample 1
TPM: 14.6
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57
Sample 2
TPM: 19.7
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80
Sample 3
TPM: 21.2
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68
Sample 4
TPM: 12.7
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68
Sample 5
TPM: 13.2
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61
Sample 6
TPM: 18.8
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80
Sample 7
TPM: 18.4
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78
Sample 8
TPM: 20.6
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84
Sample 9
TPM: 18.3
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80
Sample 10
TPM: 14.6
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78
Sample 11
TPM: 22.4
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69
Sample 12
TPM: 17.2
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72
Sample 13
TPM: 15.7
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

18.6

GTEx sample id

RPKM
 

Colon - Sigmoid
Colon - Sigmoid
RPKM: 18.7
Samples: 149

Max RPKM: 32.1
Min RPKM: 9.8
Std RPKM: 5.5
Median RPKM: 18.3
GTEX-13OW6-2226-SM-5N9FL 32.1
GTEX-V955-1726-SM-4JBHF 32.0
GTEX-13PVQ-2726-SM-5L3H7 31.8
GTEX-145MH-2726-SM-5QGQ6 30.5
GTEX-13OW5-2826-SM-5KM1G 29.6
GTEX-XUW1-1826-SM-4BOQD 29.6
GTEX-ZVT3-2826-SM-5GU6A 28.7
GTEX-11DXY-2026-SM-5N9CZ 27.6
Show all
 

Colon - Transverse
Colon - Transverse
RPKM: 18.5
Samples: 196

Max RPKM: 26.2
Min RPKM: 4.6
Std RPKM: 3.4
Median RPKM: 18.8
GTEX-11O72-2226-SM-5PNW2 26.2
GTEX-XPVG-1826-SM-4B64X 25.9
GTEX-X3Y1-1726-SM-4PQZL 25.8
GTEX-13OW5-2626-SM-5MR3M 25.7
GTEX-QEL4-1926-SM-4R1JI 25.5
GTEX-ZAB4-2226-SM-5HL97 24.5
GTEX-145MO-2426-SM-5NQ9W 24.4
GTEX-ZLV1-1226-SM-4WWBX 24.2
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

21.5

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 21.5
FF:10014-101C5 62,83,84 years, mixed 21.5

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.