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TISSUE ATLAS PRIMARY DATA CAUDATE

GENE/PROTEIN

Antibody validation


Dictionary

Caudate

CAUDATE - Expression summary

Protein expression

h
m
l
n

RNA expression

GTEx:21.9RPKM
FANTOM5:98.3Tags Per Million

CAUDATE - Annotated protein expression

Annotated protein
expression

Glial cells:Low
Neuronal cells:Low
 

Antibody staining

Antibody HPA000609

 

Antibody CAB001545

 

Antibody CAB002029

 

Antibody CAB062552

 

Glial cells

Low   Not detected   Medium   Low  

Neuronal cells

Low   Not detected   Not detected  
       
       
       

CAUDATE - HPA RNA-seq

Pending HPA RNA-seq analysis


CAUDATE - GTEx RNA-seq

Average RPKM

21.9

GTEx sample id

RPKM

 

Brain - Caudate (basal ganglia)

Brain - Caudate (basal ganglia)
RPKM: 21.9
Samples: 117

Max RPKM: 40
Min RPKM: 7.7
Std RPKM: 6.1
Median RPKM: 22
GTEX-WHSE-0011-R5A-SM-3P5ZO 40.0
GTEX-13OVJ-0011-R5a-SM-5P9H7 39.6
GTEX-13N1W-0011-R5b-SM-5MR5Q 37.2
GTEX-132Q8-0011-R5a-SM-5IJDM 35.7
GTEX-11H98-0011-R5b-SM-57WCF 34.8
GTEX-13FHO-0011-R5b-SM-5LZZ3 34.7
GTEX-13X6K-0011-R5b-SM-5PNUE 33.3
GTEX-13NYS-0011-R5a-SM-5MR4D 32.3
GTEX-13O3O-0011-R5b-SM-5KM44 31.3
GTEX-13JUV-0011-R5a-SM-5LZY5 30.5
GTEX-13JVG-0011-R5a-SM-5MR4O 29.6
GTEX-XMD1-0011-R5A-SM-4AT47 29.6
GTEX-13RTJ-0011-R5a-SM-5P9HR 29.3
GTEX-11GSP-0011-R5a-SM-57WBE 29.0
GTEX-139T8-0011-R5b-SM-5J1MO 28.4
GTEX-12ZZY-0011-R5a-SM-5EGL9 28.3
GTEX-TSE9-0011-R5A-SM-3DB7J 28.0
GTEX-T6MN-0011-R5A-SM-32QPD 27.7
GTEX-T5JC-0011-R5A-SM-32PLK 27.4
GTEX-ZE9C-0011-R5a-SM-5EGLO 27.2
GTEX-1399T-0011-R5b-SM-5IJDK 27.1
GTEX-13G51-0011-R5a-SM-5L3EB 26.7
GTEX-12WSF-0011-R5a-SM-5HL8K 26.6
GTEX-NPJ8-0011-R5a-SM-2HMJY 26.3
GTEX-11OF3-0011-R5a-SM-57WB4 26.2
GTEX-ZAB4-0011-R5a-SM-4SOKC 26.2
GTEX-12WSC-0011-R5b-SM-5CVNS 25.3
GTEX-ZE7O-0011-R5a-SM-57WBO 24.9
GTEX-13NYB-0011-R5a-SM-5MR45 24.8
GTEX-13O3Q-0011-R5b-SM-5P9H4 24.7
GTEX-13OW6-0011-R5a-SM-5O9BK 24.7
GTEX-Q2AG-0011-R5A-SM-2HMJH 24.5
GTEX-13VXU-0011-R5a-SM-5O9D7 24.4
GTEX-OHPN-0011-R5A-SM-2I5FF 24.3
GTEX-12WSA-0011-R5b-SM-5GU5I 24.2
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 24.0
GTEX-13CZV-0011-R5a-SM-5K7XA 24.0
GTEX-N7MS-0011-R5a-SM-2HMK8 24.0
GTEX-ZUA1-0011-R5b-SM-51MTG 23.8
GTEX-131YS-0011-R5b-SM-5K7YB 23.7
GTEX-145MH-0011-R5a-SM-5P9JT 23.7
GTEX-S7SE-0011-R5A-SM-2XCDA 23.7
GTEX-WL46-0011-R5A-SM-3LK6V 23.7
GTEX-N7MT-0011-R5a-SM-2I3G6 23.6
GTEX-RVPV-0011-R5A-SM-2TF69 23.5
GTEX-13FXS-0011-R5b-SM-5LZYE 23.2
GTEX-13SLX-0011-R5a-SM-5O9BV 23.2
GTEX-12WSM-0011-R5a-SM-5EQ4Y 23.1
GTEX-X585-0011-R5A-SM-46MVI 22.9
GTEX-13FLW-0011-R5a-SM-5LZX6 22.7
GTEX-12ZZW-0011-R5a-SM-5DUVN 22.5
GTEX-13SLW-0011-R5b-SM-5SI6Z 22.5
GTEX-13OW8-0011-R5b-SM-5L3FQ 22.4
GTEX-13X6I-0011-R5a-SM-5PNWW 22.4
GTEX-WVLH-0011-R5A-SM-3MJFW 22.2
GTEX-13OW7-0011-R5b-SM-5O9DM 22.1
GTEX-Y8DK-0011-R5B-SM-4RTW6 22.1
GTEX-11NV4-0011-R5a-SM-5NQ88 22.0
GTEX-P44H-0011-R5A-SM-2XCEX 22.0
GTEX-RU72-0011-R5A-SM-2TF6U 22.0
GTEX-139TT-0011-R5b-SM-5K7W8 21.8
GTEX-13X6J-0011-R5b-SM-5PNWT 21.7
GTEX-WZTO-0011-R5B-SM-3NMC5 21.7
GTEX-1313W-0011-R5b-SM-5L3EP 21.6
GTEX-12WSB-0011-R5b-SM-5GU67 21.2
GTEX-14ABY-0011-R5b-SM-5SI7B 21.2
GTEX-WWYW-0011-R5A-SM-3NB3E 21.1
GTEX-14BIM-0011-R5b-SM-5S2RM 21.0
GTEX-13PVQ-0011-R5b-SM-5O9DI 20.7
GTEX-145LS-0011-R5a-SM-5SI65 20.7
GTEX-13OVH-0011-R5b-SM-5KM4L 20.6
GTEX-QVJO-0011-R5A-SM-2S1QM 20.2
GTEX-12WSD-0011-R5b-SM-5CVNG 20.1
GTEX-13OVL-0011-R5b-SM-5L3FU 20.1
GTEX-13FLV-0011-R5a-SM-5LZWT 20.0
GTEX-R55E-0011-R5A-SM-2TC5N 19.8
GTEX-13OW5-0011-R5b-SM-5L3FR 19.1
GTEX-NL4W-0011-R5a-SM-2I3GD 18.9
GTEX-13S7M-0011-R5b-SM-5P9HS 18.8
GTEX-NPJ7-0011-R5a-SM-33HBK 18.7
GTEX-ZF28-0011-R5a-SM-4WWCZ 18.7
GTEX-UTHO-0011-R5A-SM-3GIJD 18.6
GTEX-RVPU-0011-R5A-SM-2XCAD 18.5
GTEX-XOTO-0011-R5A-SM-4B657 18.3
GTEX-12ZZX-0011-R5a-SM-5HL89 18.1
GTEX-T2IS-0011-R5A-SM-32QP4 18.0
GTEX-144GO-0011-R5a-SM-5PNUR 17.8
GTEX-YFC4-0011-R5a-SM-4RGLR 17.6
GTEX-139TS-0011-R5b-SM-5J2MZ 17.3
GTEX-OXRN-0011-R5A-SM-2I5EF 17.3
GTEX-ZV68-0011-R5a-SM-4YCDW 17.2
GTEX-1445S-0011-R5a-SM-5PNUS 17.1
GTEX-PWO3-0011-R5A-SM-2I5EZ 17.1
GTEX-Z93S-0011-R5b-SM-4RGNI 16.8
GTEX-ZVZQ-0011-R5b-SM-57WDC 16.7
GTEX-X261-0011-R5A-SM-3NMB4 16.6
GTEX-X4XX-0011-R5A-SM-46MWN 16.6
GTEX-QMR6-0011-R5A-SM-32PKT 16.5
GTEX-ZXG5-0011-R5b-SM-57WBN 16.5
GTEX-14BIN-0011-R5b-SM-5SI78 16.4
GTEX-13PLJ-0011-R5a-SM-5O9BG 16.0
GTEX-ZVT3-0011-R5a-SM-51MSI 16.0
GTEX-NL3H-0011-R5a-SM-2I3GB 15.0
GTEX-11WQC-0011-R5a-SM-5BC74 14.8
GTEX-13CF2-0011-R5a-SM-5LZWS 13.7
GTEX-13CIG-0011-R5b-SM-5L3F2 13.6
GTEX-13112-0011-R5b-SM-5DUV8 13.2
GTEX-11UD1-0011-R5b-SM-5P9FP 13.1
GTEX-YJ89-0011-R5a-SM-4V6GM 13.1
GTEX-PVOW-0011-R5A-SM-32PL7 12.9
GTEX-12WSH-0011-R5b-SM-5P9F3 12.8
GTEX-144GL-0011-R5b-SM-5PNUJ 12.6
GTEX-13FHP-0011-R5b-SM-5LZY2 12.2
GTEX-1477Z-0011-R5b-SM-5PNUO 12.2
GTEX-S7PM-0011-R5A-SM-3NM8G 11.0
GTEX-13NZA-0011-R5b-SM-5KM4K 10.1
GTEX-145MG-0011-R5b-SM-5S2VU 7.7
Show all

CAUDATE - FANTOM5 CAGE

Average Tags Per Million

98.3

FANTOM5 sample id

Sample description

Tags Per Million

Caudate nucleus
Tags Per Million: 98.3
FF:10379-105H1 89 years, female 117.6
FF:10164-103B2 76 years, female 78.9

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