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TISSUE ATLAS PRIMARY DATA CAUDATE

GENE/PROTEIN

Antibody validation


Dictionary

Caudate

CAUDATE - Expression summary

Protein expression

h
m
l
n

RNA expression

GTEx:67.6RPKM
FANTOM5:40.3Tags Per Million

CAUDATE - Annotated protein expression

Annotated protein
expression

Glial cells:Medium
Neuronal cells:Low
 

Antibody staining

Antibody HPA018910

 

Antibody HPA018921

 

Antibody HPA018923

 

Glial cells

High   Not detected   Medium  

Neuronal cells

Medium   Low   Low  
     
     
     

CAUDATE - HPA RNA-seq

Pending HPA RNA-seq analysis


CAUDATE - GTEx RNA-seq

Average RPKM

67.6

GTEx sample id

RPKM

 

Brain - Caudate (basal ganglia)

Brain - Caudate (basal ganglia)
RPKM: 67.6
Samples: 117

Max RPKM: 138.6
Min RPKM: 30.8
Std RPKM: 18.5
Median RPKM: 65.9
GTEX-12WSA-0011-R5b-SM-5GU5I 138.6
GTEX-13X6K-0011-R5b-SM-5PNUE 116.8
GTEX-ZUA1-0011-R5b-SM-51MTG 112.7
GTEX-139TT-0011-R5b-SM-5K7W8 105.3
GTEX-13RTJ-0011-R5a-SM-5P9HR 103.3
GTEX-13NYB-0011-R5a-SM-5MR45 102.7
GTEX-11H98-0011-R5b-SM-57WCF 100.9
GTEX-13CZV-0011-R5a-SM-5K7XA 98.8
GTEX-139T8-0011-R5b-SM-5J1MO 93.0
GTEX-T6MN-0011-R5A-SM-32QPD 93.0
GTEX-12WSM-0011-R5a-SM-5EQ4Y 92.5
GTEX-13JVG-0011-R5a-SM-5MR4O 91.3
GTEX-13OVJ-0011-R5a-SM-5P9H7 89.1
GTEX-12ZZW-0011-R5a-SM-5DUVN 87.7
GTEX-RU72-0011-R5A-SM-2TF6U 87.4
GTEX-Q2AG-0011-R5A-SM-2HMJH 86.7
GTEX-132Q8-0011-R5a-SM-5IJDM 84.9
GTEX-ZAB4-0011-R5a-SM-4SOKC 84.9
GTEX-13FLV-0011-R5a-SM-5LZWT 84.7
GTEX-12WSC-0011-R5b-SM-5CVNS 83.8
GTEX-12ZZY-0011-R5a-SM-5EGL9 81.8
GTEX-R55E-0011-R5A-SM-2TC5N 80.6
GTEX-XOTO-0011-R5A-SM-4B657 80.6
GTEX-13O3Q-0011-R5b-SM-5P9H4 80.3
GTEX-13NYS-0011-R5a-SM-5MR4D 79.8
GTEX-11OF3-0011-R5a-SM-57WB4 79.7
GTEX-ZE9C-0011-R5a-SM-5EGLO 79.5
GTEX-TSE9-0011-R5A-SM-3DB7J 79.4
GTEX-N7MT-0011-R5a-SM-2I3G6 79.1
GTEX-OHPN-0011-R5A-SM-2I5FF 78.7
GTEX-13OVH-0011-R5b-SM-5KM4L 78.3
GTEX-1313W-0011-R5b-SM-5L3EP 77.7
GTEX-13O3O-0011-R5b-SM-5KM44 77.5
GTEX-11NV4-0011-R5a-SM-5NQ88 77.4
GTEX-13FHO-0011-R5b-SM-5LZZ3 77.1
GTEX-13JUV-0011-R5a-SM-5LZY5 76.9
GTEX-12WSB-0011-R5b-SM-5GU67 76.4
GTEX-13G51-0011-R5a-SM-5L3EB 75.8
GTEX-145MH-0011-R5a-SM-5P9JT 75.3
GTEX-T5JC-0011-R5A-SM-32PLK 75.2
GTEX-N7MS-0011-R5a-SM-2HMK8 74.3
GTEX-131YS-0011-R5b-SM-5K7YB 73.9
GTEX-ZF28-0011-R5a-SM-4WWCZ 73.8
GTEX-1399T-0011-R5b-SM-5IJDK 73.5
GTEX-ZE7O-0011-R5a-SM-57WBO 72.9
GTEX-13N1W-0011-R5b-SM-5MR5Q 71.8
GTEX-11GSP-0011-R5a-SM-57WBE 70.3
GTEX-13OW8-0011-R5b-SM-5L3FQ 69.0
GTEX-QVJO-0011-R5A-SM-2S1QM 69.0
GTEX-13X6I-0011-R5a-SM-5PNWW 68.8
GTEX-X585-0011-R5A-SM-46MVI 68.3
GTEX-ZVZQ-0011-R5b-SM-57WDC 68.3
GTEX-12ZZX-0011-R5a-SM-5HL89 67.8
GTEX-12WSD-0011-R5b-SM-5CVNG 67.5
GTEX-WVLH-0011-R5A-SM-3MJFW 67.1
GTEX-14BIM-0011-R5b-SM-5S2RM 66.8
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 66.6
GTEX-13OW5-0011-R5b-SM-5L3FR 66.1
GTEX-13FXS-0011-R5b-SM-5LZYE 65.9
GTEX-13OVL-0011-R5b-SM-5L3FU 65.8
GTEX-13OW7-0011-R5b-SM-5O9DM 65.6
GTEX-13SLW-0011-R5b-SM-5SI6Z 65.6
GTEX-13X6J-0011-R5b-SM-5PNWT 64.8
GTEX-14ABY-0011-R5b-SM-5SI7B 64.7
GTEX-13VXU-0011-R5a-SM-5O9D7 64.1
GTEX-13SLX-0011-R5a-SM-5O9BV 64.0
GTEX-ZXG5-0011-R5b-SM-57WBN 63.8
GTEX-13OW6-0011-R5a-SM-5O9BK 62.6
GTEX-RVPV-0011-R5A-SM-2TF69 62.6
GTEX-145LS-0011-R5a-SM-5SI65 62.4
GTEX-YFC4-0011-R5a-SM-4RGLR 61.8
GTEX-13FLW-0011-R5a-SM-5LZX6 61.5
GTEX-144GO-0011-R5a-SM-5PNUR 61.5
GTEX-YJ89-0011-R5a-SM-4V6GM 61.4
GTEX-13CIG-0011-R5b-SM-5L3F2 61.2
GTEX-NL4W-0011-R5a-SM-2I3GD 61.0
GTEX-Y8DK-0011-R5B-SM-4RTW6 60.6
GTEX-13S7M-0011-R5b-SM-5P9HS 60.3
GTEX-XMD1-0011-R5A-SM-4AT47 58.5
GTEX-S7SE-0011-R5A-SM-2XCDA 58.2
GTEX-NPJ7-0011-R5a-SM-33HBK 58.1
GTEX-WWYW-0011-R5A-SM-3NB3E 56.3
GTEX-1445S-0011-R5a-SM-5PNUS 55.8
GTEX-NPJ8-0011-R5a-SM-2HMJY 55.7
GTEX-WL46-0011-R5A-SM-3LK6V 55.7
GTEX-Z93S-0011-R5b-SM-4RGNI 55.6
GTEX-ZV68-0011-R5a-SM-4YCDW 55.3
GTEX-P44H-0011-R5A-SM-2XCEX 55.0
GTEX-OXRN-0011-R5A-SM-2I5EF 54.3
GTEX-13PVQ-0011-R5b-SM-5O9DI 53.8
GTEX-X4XX-0011-R5A-SM-46MWN 53.2
GTEX-PWO3-0011-R5A-SM-2I5EZ 53.1
GTEX-NL3H-0011-R5a-SM-2I3GB 52.8
GTEX-X261-0011-R5A-SM-3NMB4 52.8
GTEX-12WSH-0011-R5b-SM-5P9F3 52.2
GTEX-13112-0011-R5b-SM-5DUV8 49.2
GTEX-WZTO-0011-R5B-SM-3NMC5 49.0
GTEX-11WQC-0011-R5a-SM-5BC74 48.9
GTEX-RVPU-0011-R5A-SM-2XCAD 48.9
GTEX-14BIN-0011-R5b-SM-5SI78 48.8
GTEX-QMR6-0011-R5A-SM-32PKT 47.5
GTEX-ZVT3-0011-R5a-SM-51MSI 47.5
GTEX-144GL-0011-R5b-SM-5PNUJ 47.0
GTEX-13CF2-0011-R5a-SM-5LZWS 46.5
GTEX-11UD1-0011-R5b-SM-5P9FP 46.1
GTEX-13FHP-0011-R5b-SM-5LZY2 44.7
GTEX-13PLJ-0011-R5a-SM-5O9BG 44.5
GTEX-12WSF-0011-R5a-SM-5HL8K 43.8
GTEX-UTHO-0011-R5A-SM-3GIJD 42.0
GTEX-WHSE-0011-R5A-SM-3P5ZO 41.0
GTEX-139TS-0011-R5b-SM-5J2MZ 40.9
GTEX-1477Z-0011-R5b-SM-5PNUO 39.0
GTEX-145MG-0011-R5b-SM-5S2VU 38.3
GTEX-S7PM-0011-R5A-SM-3NM8G 38.0
GTEX-T2IS-0011-R5A-SM-32QP4 36.9
GTEX-PVOW-0011-R5A-SM-32PL7 31.0
GTEX-13NZA-0011-R5b-SM-5KM4K 30.8
Show all

CAUDATE - FANTOM5 CAGE

Average Tags Per Million

40.3

FANTOM5 sample id

Sample description

Tags Per Million

Caudate nucleus
Tags Per Million: 40.3
FF:10164-103B2 76 years, female 50.1
FF:10379-105H1 89 years, female 30.5

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