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COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:79.9TPM
GTEx:48.2RPKM
FANTOM5:78.1Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Low
Glandular cells:High
Peripheral nerve/ganglion:Medium
 

Antibody staining

Antibody HPA018910

  

Antibody HPA018921

  

Antibody HPA018923

  

Endothelial cells

 Low   Not detected   Low  

Glandular cells

 High   High   High  

Peripheral nerve/ganglion

 Medium   Medium  
     
     
     

COLON - HPA RNA-seq

Average TPM

79.9
overview Male, age 54
Sample 1
TPM: 78.4
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57
Sample 2
TPM: 90.5
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80
Sample 3
TPM: 116.3
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68
Sample 4
TPM: 135.7
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68
Sample 5
TPM: 56.6
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61
Sample 6
TPM: 65.7
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80
Sample 7
TPM: 42.8
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78
Sample 8
TPM: 68.7
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84
Sample 9
TPM: 53.7
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80
Sample 10
TPM: 93.1
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78
Sample 11
TPM: 56.4
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69
Sample 12
TPM: 100.7
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72
Sample 13
TPM: 80.5
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

48.2

GTEx sample id

RPKM
 

Colon - Sigmoid
Colon - Sigmoid
RPKM: 42.3
Samples: 149

Max RPKM: 94.2
Min RPKM: 17.6
Std RPKM: 10.7
Median RPKM: 41
GTEX-YEC3-2026-SM-4WWFL 94.2
GTEX-1399U-2226-SM-5KLZI 78.3
GTEX-ZT9W-1726-SM-51MS3 66.7
GTEX-ZTSS-1226-SM-51MSZ 62.5
GTEX-ZVT2-1726-SM-51MRO 62.1
GTEX-11P81-1426-SM-5P9JN 61.3
GTEX-13OVI-2126-SM-5KM3U 61.0
GTEX-13PL7-2426-SM-5J2N3 60.3
Show all
 

Colon - Transverse
Colon - Transverse
RPKM: 52.7
Samples: 196

Max RPKM: 130.2
Min RPKM: 11.1
Std RPKM: 16.7
Median RPKM: 52.5
GTEX-1399R-2226-SM-5P9JB 130.2
GTEX-146FQ-1926-SM-5NQBY 120.1
GTEX-XUJ4-2026-SM-4BOOW 98.2
GTEX-Y5LM-1526-SM-4VDTA 92.9
GTEX-ZT9W-1826-SM-51MQX 86.6
GTEX-Y3IK-1826-SM-4WWDS 84.6
GTEX-YF7O-1726-SM-5IFJ9 84.3
GTEX-UJHI-1126-SM-4IHLN 84.0
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

78.1

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 78.1
FF:10014-101C5 62,83,84 years, mixed 78.1

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.