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Term
Gene name

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Chromosome

External id

In atlas

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Reliability

Reliability

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Validation

Method

Validation

Method

Validation

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Searches

Tissue

Cell type

Expression

Tissue

Specificity

Cell line

Specificity

Tissue

Detectable

Cell line

Detectable

Category

Score

Score

Score

Antibodies

Column

 
 
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SDC1
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TISSUE ATLAS PRIMARY DATA PROSTATE

GENE/PROTEIN

Antibody validation


Dictionary

Prostate

Tissue proteome

Prostate

PROSTATE - Expression summary

Protein expression

h
m
l
n

RNA expression

HPA:43.6TPM
GTEx:47.3RPKM
FANTOM5:70.0Tags Per Million

PROSTATE - Annotated protein expression

Annotated protein
expression

Glandular cells:Not detected
 

Antibody staining

Antibody HPA006185

 

Antibody CAB002424

 

Glandular cells

Not detected   Not detected  
   
   
   

PROSTATE - HPA RNA-seq

Average TPM

43.6

overview Male, age 62
Sample 1
TPM: 41.1
Cell types%
Glandular cells: 30
Smooth muscle cells: 55
Skeletal muscle cells: 5
Other cell types: 10
N/A Male, age 65
Sample 2
TPM: 39.6
Cell types%
Glandular cells: 20
Smooth muscle cells: 60
Other cell types: 20
overview Male, age 65
Sample 3
TPM: 28.3
Cell types%
Glandular cells: 30
Smooth muscle cells: 65
Other cell types: 5
overview Male, age 68
Sample 4
TPM: 126.7
Cell types%
Glandular cells: 30
Smooth muscle cells: 65
Other cell types: 5
overview Male, age 60
Sample 5
TPM: 28.8
Cell types%
Glandular cells: 40
Smooth muscle cells: 55
Other cell types: 5
overview Male, age 66
Sample 6
TPM: 28.1
Cell types%
Glandular cells: 50
Smooth muscle cells: 45
Other cell types: 5
overview Male, age 63
Sample 7
TPM: 28.0
Cell types%
Glandular cells: 60
Smooth muscle cells: 35
Other cell types: 5
overview Male, age 66
Sample 8
TPM: 77.0
Cell types%
Glandular cells: 65
Smooth muscle cells: 30
Other cell types: 5
overview Male, age 58
Sample 9
TPM: 12.6
Cell types%
Glandular cells: 45
Smooth muscle cells: 50
Other cell types: 5

PROSTATE - GTEx RNA-seq

Average RPKM

47.3

GTEx sample id

RPKM

 

Prostate

Prostate
RPKM: 47.3
Samples: 106

Max RPKM: 251.2
Min RPKM: 0.9
Std RPKM: 45.1
Median RPKM: 34.3
GTEX-145LV-1226-SM-5S2QH 251.2
GTEX-U412-2026-SM-4DXSI 249.8
GTEX-V1D1-1926-SM-4JBGX 171.1
GTEX-Q2AI-1126-SM-48U19 150.1
GTEX-ZPU1-2026-SM-57WFI 141.6
GTEX-QV31-1026-SM-4R1K3 139.3
GTEX-S4Q7-1026-SM-4AD75 132.2
GTEX-U8XE-2526-SM-4E3IT 124.3
GTEX-11DYG-2526-SM-5N9BB 121.4
GTEX-WFG8-1826-SM-4LVM4 119.0
GTEX-ZUA1-2826-SM-59HLE 115.7
GTEX-YF7O-1926-SM-4W1YQ 114.7
GTEX-117YW-1426-SM-5EGGO 111.3
GTEX-U3ZM-0926-SM-4DXSW 103.2
GTEX-11TT1-2026-SM-5EQM8 80.1
GTEX-13OW8-0426-SM-5J2NR 73.0
GTEX-146FQ-1726-SM-5QGPX 70.5
GTEX-12ZZZ-2026-SM-5LZWJ 67.5
GTEX-139T6-1526-SM-5P9G6 66.1
GTEX-OOBJ-2026-SM-3NB1R 65.3
GTEX-YB5E-1826-SM-5IFI4 63.7
GTEX-XAJ8-0626-SM-47JY4 54.9
GTEX-13O61-1726-SM-5KM46 54.7
GTEX-XQ3S-2526-SM-4BOOG 54.7
GTEX-132QS-1126-SM-5P9GC 54.5
GTEX-11ZUS-2126-SM-5N9E6 54.1
GTEX-Y9LG-1826-SM-4VBQC 53.1
GTEX-S33H-1826-SM-4AD65 52.4
GTEX-Y8E4-2126-SM-5RQHO 51.6
GTEX-145LT-0626-SM-5O99E 51.0
GTEX-YJ8A-1126-SM-5IFJU 50.9
GTEX-UTHO-2726-SM-4JBH9 50.5
GTEX-WFG7-1826-SM-3GIL1 50.3
GTEX-13FTW-1226-SM-5LZZ1 47.2
GTEX-WFON-1626-SM-4LVMV 46.9
GTEX-13O21-1126-SM-5N9EV 43.5
GTEX-ZDYS-1226-SM-5IJF3 43.4
GTEX-ZLFU-1726-SM-4WWBU 43.0
GTEX-OIZH-2026-SM-3NB1M 40.8
GTEX-XPVG-2026-SM-4B65E 40.6
GTEX-111YS-1726-SM-5GIED 40.1
GTEX-ZT9W-1626-SM-4YCDQ 39.7
GTEX-ZY6K-1526-SM-5GZXE 38.9
GTEX-13FHO-2826-SM-5K7ZA 38.1
GTEX-ZTTD-2726-SM-57WFA 38.1
GTEX-11NSD-0826-SM-5986S 37.7
GTEX-ZTX8-1026-SM-5EGHD 37.0
GTEX-13G51-2326-SM-5LZXV 36.5
GTEX-14ABY-0726-SM-5Q5DF 35.4
GTEX-12BJ1-1226-SM-5LUAE 35.3
GTEX-132NY-2826-SM-5P9G2 35.3
GTEX-1399R-0526-SM-5IJEF 34.6
GTEX-QMRM-1426-SM-4R1K8 34.6
GTEX-13FXS-2826-SM-5LZYC 34.0
GTEX-WZTO-0926-SM-4PQZ3 33.9
GTEX-RWSA-2026-SM-47JX8 33.7
GTEX-SNOS-1026-SM-4DM4Y 32.2
GTEX-XGQ4-1826-SM-4AT6F 31.9
GTEX-WH7G-1726-SM-4LVKY 31.2
GTEX-XOTO-2826-SM-4B65I 31.0
GTEX-14BMV-2326-SM-5RQJ4 30.6
GTEX-SNMC-0926-SM-4DM5U 30.2
GTEX-S3XE-1326-SM-4AD4H 30.1
GTEX-11P7K-0626-SM-5985Z 29.2
GTEX-111CU-1526-SM-5N9FS 28.7
GTEX-X5EB-1826-SM-4E3K8 27.4
GTEX-XMK1-1026-SM-4B65H 26.9
GTEX-11OF3-1726-SM-5GU5Q 25.4
GTEX-WOFM-0326-SM-4OOSL 24.7
GTEX-13N2G-1826-SM-5KM1I 24.5
GTEX-PLZ6-1126-SM-3P5ZR 24.5
GTEX-T8EM-1826-SM-4DM7F 24.3
GTEX-111FC-2026-SM-5GZYO 23.9
GTEX-S95S-1026-SM-4B64M 23.4
GTEX-11EQ9-1726-SM-5HL6U 23.3
GTEX-NFK9-2226-SM-3MJGP 23.3
GTEX-11TUW-2126-SM-5GU7B 23.1
GTEX-ZZ64-0926-SM-5E44L 22.4
GTEX-QV44-1526-SM-4R1KI 22.3
GTEX-U4B1-1426-SM-4DXTX 21.5
GTEX-148VJ-1826-SM-5Q5DV 21.2
GTEX-117YX-1526-SM-5H12T 20.5
GTEX-RM2N-1126-SM-48FCY 20.4
GTEX-QLQ7-1326-SM-4R1JY 18.9
GTEX-14E6E-1126-SM-5S2R4 18.4
GTEX-OOBK-2025-SM-3LK5S 18.2
GTEX-13NYS-1026-SM-5KLZT 18.0
GTEX-11O72-2726-SM-5HL6K 16.8
GTEX-144GM-0826-SM-5O98R 16.8
GTEX-1399T-1226-SM-5P9J5 16.7
GTEX-13111-1326-SM-5GCNO 15.2
GTEX-11P82-1126-SM-5BC5K 14.9
GTEX-SJXC-2026-SM-4DM6N 14.5
GTEX-11WQK-2726-SM-5EQMU 14.0
GTEX-QEG4-2226-SM-4R1JM 13.4
GTEX-VJYA-1226-SM-3GIJ6 12.0
GTEX-12C56-1326-SM-5FQSV 10.5
GTEX-ZVP2-0826-SM-59HJ6 9.2
GTEX-REY6-2126-SM-48FD9 7.7
GTEX-V955-1826-SM-4JBIL 6.1
GTEX-131XF-1926-SM-5DUW4 5.5
GTEX-NPJ8-2426-SM-3MJHL 3.6
GTEX-12696-2226-SM-5EQ65 3.3
GTEX-13RTJ-2126-SM-5S2PZ 1.8
GTEX-14C5O-2826-SM-5RQI6 1.7
GTEX-WK11-2626-SM-4OOSK 0.9
Show all

PROSTATE - FANTOM5 CAGE

Average Tags Per Million

70.0

FANTOM5 sample id

Sample description

Tags Per Million

Prostate
Tags Per Million: 70.0
FF:10022-101D4 73,79,93 years, male 70.0

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