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TISSUE ATLAS PRIMARY DATA CAUDATE
MOUSE BRAIN

GENE/PROTEIN

Antibody validation


Dictionary

Caudate

CAUDATE - Expression summary

Protein expression

h
m
l
n

RNA expression

GTEx:32.2RPKM
FANTOM5:105.5Tags Per Million

CAUDATE - Annotated protein expression

Annotated protein
expression

Glial cells:Not detected
Neuronal cells:High
 

Antibody staining

Antibody HPA027137

 

Antibody HPA045760

 

Antibody HPA050590

 

Glial cells

Not detected   Not detected   Not detected  

Neuronal cells

High   Medium   Not detected  
     
     
     

CAUDATE - HPA RNA-seq

Pending HPA RNA-seq analysis


CAUDATE - GTEx RNA-seq

Average RPKM

32.2

GTEx sample id

RPKM

 

Brain - Caudate (basal ganglia)

Brain - Caudate (basal ganglia)
RPKM: 32.2
Samples: 117

Max RPKM: 71.9
Min RPKM: 6.3
Std RPKM: 15.5
Median RPKM: 32.3
GTEX-T6MN-0011-R5A-SM-32QPD 71.9
GTEX-13G51-0011-R5a-SM-5L3EB 66.7
GTEX-131YS-0011-R5b-SM-5K7YB 65.4
GTEX-T5JC-0011-R5A-SM-32PLK 62.3
GTEX-Q2AG-0011-R5A-SM-2HMJH 62.1
GTEX-WHSE-0011-R5A-SM-3P5ZO 59.5
GTEX-1313W-0011-R5b-SM-5L3EP 58.8
GTEX-13O3Q-0011-R5b-SM-5P9H4 57.0
GTEX-ZAB4-0011-R5a-SM-4SOKC 56.6
GTEX-11OF3-0011-R5a-SM-57WB4 56.5
GTEX-12ZZY-0011-R5a-SM-5EGL9 55.3
GTEX-P44H-0011-R5A-SM-2XCEX 54.6
GTEX-145MH-0011-R5a-SM-5P9JT 54.5
GTEX-14BIM-0011-R5b-SM-5S2RM 53.3
GTEX-13X6K-0011-R5b-SM-5PNUE 52.2
GTEX-13RTJ-0011-R5a-SM-5P9HR 51.2
GTEX-N7MT-0011-R5a-SM-2I3G6 49.6
GTEX-QVJO-0011-R5A-SM-2S1QM 49.2
GTEX-WL46-0011-R5A-SM-3LK6V 49.1
GTEX-X585-0011-R5A-SM-46MVI 49.0
GTEX-S7SE-0011-R5A-SM-2XCDA 46.2
GTEX-11H98-0011-R5b-SM-57WCF 45.8
GTEX-145LS-0011-R5a-SM-5SI65 45.7
GTEX-1399T-0011-R5b-SM-5IJDK 45.5
GTEX-13FHO-0011-R5b-SM-5LZZ3 45.5
GTEX-12WSC-0011-R5b-SM-5CVNS 45.4
GTEX-11GSP-0011-R5a-SM-57WBE 44.8
GTEX-RU72-0011-R5A-SM-2TF6U 44.6
GTEX-ZUA1-0011-R5b-SM-51MTG 44.5
GTEX-13VXU-0011-R5a-SM-5O9D7 44.1
GTEX-13N1W-0011-R5b-SM-5MR5Q 43.9
GTEX-UTHO-0011-R5A-SM-3GIJD 43.2
GTEX-14ABY-0011-R5b-SM-5SI7B 42.8
GTEX-N7MS-0011-R5a-SM-2HMK8 42.8
GTEX-132Q8-0011-R5a-SM-5IJDM 42.1
GTEX-13FXS-0011-R5b-SM-5LZYE 41.9
GTEX-WVLH-0011-R5A-SM-3MJFW 40.6
GTEX-13CZV-0011-R5a-SM-5K7XA 38.4
GTEX-13JUV-0011-R5a-SM-5LZY5 38.0
GTEX-13OVL-0011-R5b-SM-5L3FU 37.6
GTEX-13X6J-0011-R5b-SM-5PNWT 37.4
GTEX-13SLX-0011-R5a-SM-5O9BV 36.6
GTEX-13O3O-0011-R5b-SM-5KM44 36.5
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 36.1
GTEX-13OW6-0011-R5a-SM-5O9BK 35.9
GTEX-TSE9-0011-R5A-SM-3DB7J 35.8
GTEX-12WSF-0011-R5a-SM-5HL8K 35.6
GTEX-13OW8-0011-R5b-SM-5L3FQ 35.6
GTEX-T2IS-0011-R5A-SM-32QP4 35.5
GTEX-139TT-0011-R5b-SM-5K7W8 34.5
GTEX-12WSM-0011-R5a-SM-5EQ4Y 33.8
GTEX-R55E-0011-R5A-SM-2TC5N 33.8
GTEX-13S7M-0011-R5b-SM-5P9HS 33.4
GTEX-12WSD-0011-R5b-SM-5CVNG 33.3
GTEX-WZTO-0011-R5B-SM-3NMC5 33.0
GTEX-Y8DK-0011-R5B-SM-4RTW6 32.9
GTEX-RVPU-0011-R5A-SM-2XCAD 32.8
GTEX-13X6I-0011-R5a-SM-5PNWW 32.4
GTEX-13FLW-0011-R5a-SM-5LZX6 32.3
GTEX-11NV4-0011-R5a-SM-5NQ88 31.7
GTEX-RVPV-0011-R5A-SM-2TF69 31.4
GTEX-WWYW-0011-R5A-SM-3NB3E 31.0
GTEX-Z93S-0011-R5b-SM-4RGNI 30.8
GTEX-13OW7-0011-R5b-SM-5O9DM 30.5
GTEX-13NYS-0011-R5a-SM-5MR4D 29.9
GTEX-OHPN-0011-R5A-SM-2I5FF 29.8
GTEX-13OVH-0011-R5b-SM-5KM4L 28.9
GTEX-13OW5-0011-R5b-SM-5L3FR 28.2
GTEX-ZE9C-0011-R5a-SM-5EGLO 28.0
GTEX-ZE7O-0011-R5a-SM-57WBO 26.9
GTEX-PVOW-0011-R5A-SM-32PL7 26.0
GTEX-13NYB-0011-R5a-SM-5MR45 25.0
GTEX-12ZZW-0011-R5a-SM-5DUVN 24.4
GTEX-XMD1-0011-R5A-SM-4AT47 23.8
GTEX-12WSB-0011-R5b-SM-5GU67 23.1
GTEX-XOTO-0011-R5A-SM-4B657 23.1
GTEX-YJ89-0011-R5a-SM-4V6GM 23.1
GTEX-ZVZQ-0011-R5b-SM-57WDC 22.5
GTEX-13SLW-0011-R5b-SM-5SI6Z 22.1
GTEX-12ZZX-0011-R5a-SM-5HL89 21.7
GTEX-13FLV-0011-R5a-SM-5LZWT 21.6
GTEX-NL4W-0011-R5a-SM-2I3GD 21.6
GTEX-ZF28-0011-R5a-SM-4WWCZ 21.2
GTEX-ZXG5-0011-R5b-SM-57WBN 21.2
GTEX-OXRN-0011-R5A-SM-2I5EF 20.6
GTEX-QMR6-0011-R5A-SM-32PKT 20.5
GTEX-14BIN-0011-R5b-SM-5SI78 20.0
GTEX-YFC4-0011-R5a-SM-4RGLR 20.0
GTEX-13CIG-0011-R5b-SM-5L3F2 18.9
GTEX-144GO-0011-R5a-SM-5PNUR 18.9
GTEX-13JVG-0011-R5a-SM-5MR4O 17.7
GTEX-X4XX-0011-R5A-SM-46MWN 16.4
GTEX-NL3H-0011-R5a-SM-2I3GB 16.2
GTEX-144GL-0011-R5b-SM-5PNUJ 15.7
GTEX-12WSA-0011-R5b-SM-5GU5I 15.5
GTEX-NPJ8-0011-R5a-SM-2HMJY 15.2
GTEX-ZV68-0011-R5a-SM-4YCDW 15.2
GTEX-13112-0011-R5b-SM-5DUV8 14.9
GTEX-X261-0011-R5A-SM-3NMB4 14.5
GTEX-PWO3-0011-R5A-SM-2I5EZ 14.0
GTEX-NPJ7-0011-R5a-SM-33HBK 13.8
GTEX-13PLJ-0011-R5a-SM-5O9BG 13.7
GTEX-12WSH-0011-R5b-SM-5P9F3 13.4
GTEX-13OVJ-0011-R5a-SM-5P9H7 12.3
GTEX-ZVT3-0011-R5a-SM-51MSI 12.3
GTEX-11WQC-0011-R5a-SM-5BC74 12.1
GTEX-139TS-0011-R5b-SM-5J2MZ 12.0
GTEX-13PVQ-0011-R5b-SM-5O9DI 11.9
GTEX-139T8-0011-R5b-SM-5J1MO 11.4
GTEX-13FHP-0011-R5b-SM-5LZY2 11.2
GTEX-1445S-0011-R5a-SM-5PNUS 10.3
GTEX-1477Z-0011-R5b-SM-5PNUO 10.2
GTEX-S7PM-0011-R5A-SM-3NM8G 9.2
GTEX-13CF2-0011-R5a-SM-5LZWS 9.1
GTEX-11UD1-0011-R5b-SM-5P9FP 8.8
GTEX-145MG-0011-R5b-SM-5S2VU 7.6
GTEX-13NZA-0011-R5b-SM-5KM4K 6.3
Show all

CAUDATE - FANTOM5 CAGE

Average Tags Per Million

105.5

FANTOM5 sample id

Sample description

Tags Per Million

Caudate nucleus
Tags Per Million: 105.5
FF:10379-105H1 89 years, female 130.6
FF:10164-103B2 76 years, female 80.4

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