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TISSUE ATLAS PRIMARY DATA CEREBRAL CORTEX
MOUSE BRAIN

GENE/PROTEIN

Antibody validation


Dictionary

Cerebral cortex

Tissue proteome

Brain
Extended brain samples

CEREBRAL CORTEX - Expression summary

Protein expression

h
m
l
n

RNA expression

HPA:51.8TPM
GTEx:25.5RPKM

CEREBRAL CORTEX - Annotated protein expression

Annotated protein
expression

Endothelial cells:Not detected
Glial cells:Low
Neuronal cells:Medium
Neuropil:Low
 

Antibody staining

Antibody HPA027137

 

Antibody HPA045760

 

Antibody HPA050590

 

Endothelial cells

Not detected   Not detected   Not detected  

Glial cells

Low   Low   Not detected  

Neuronal cells

Medium   Medium   Low  

Neuropil

Not detected   Low   Not detected  
     
     
     

CEREBRAL CORTEX - HPA RNA-seq

Average TPM

51.8

N/A Male, age 5
Sample 1
TPM: 58.3
overview Female, age 40
Sample 2
TPM: 37.8
Cell types%
Neuronal cells: 35
Glial cells and endothelial cells: 65
overview Male, age 70
Sample 3
TPM: 59.3
Cell types%
Neuronal cells: 35
Glial cells and endothelial cells: 65

CEREBRAL CORTEX - GTEx RNA-seq

Average RPKM

25.5

GTEx sample id

RPKM

 

Brain - Cortex

Brain - Cortex
RPKM: 27.3
Samples: 114

Max RPKM: 44.7
Min RPKM: 12.1
Std RPKM: 6.9
Median RPKM: 27.1
GTEX-X585-3026-SM-46MWF 44.7
GTEX-T5JC-2426-SM-3NMDB 41.1
GTEX-131YS-3126-SM-5KLYT 40.0
GTEX-Y111-2726-SM-4TT3N 39.7
GTEX-X4XX-3026-SM-3NMB2 37.6
GTEX-Z93S-2926-SM-57WB9 37.6
GTEX-13X6K-2926-SM-5Q5D5 37.5
GTEX-T2IS-3026-SM-32QPM 36.8
GTEX-WVLH-3026-SM-3MJG9 36.8
GTEX-14BMV-3026-SM-5S2PQ 36.6
GTEX-13FXS-3126-SM-5J2NN 36.1
GTEX-117XS-3026-SM-5N9CA 35.8
GTEX-13NYC-2826-SM-5K7WR 35.7
GTEX-RNOR-2326-SM-2TF4I 35.5
GTEX-WZTO-2926-SM-3NM9I 35.4
GTEX-11ZUS-2926-SM-5FQSL 35.0
GTEX-12126-1026-SM-5P9JJ 34.8
GTEX-YJ89-3026-SM-5IFJI 34.6
GTEX-11NUK-2926-SM-5A5MD 34.3
GTEX-144GL-3026-SM-5Q5CW 34.3
GTEX-12WSC-3026-SM-5GCNF 34.0
GTEX-T6MN-2626-SM-32PMQ 34.0
GTEX-14ASI-3026-SM-5S2PN 33.9
GTEX-WL46-2926-SM-3LK82 33.9
GTEX-11NV4-2126-SM-5N9DS 33.8
GTEX-QVJO-1426-SM-2S1QY 33.8
GTEX-ZUA1-3026-SM-59HJC 33.5
GTEX-12ZZX-2926-SM-5GCOQ 33.4
GTEX-13OW6-3026-SM-5J2MI 33.0
GTEX-ZYFD-3026-SM-5E44C 32.7
GTEX-11PRG-2926-SM-5987A 32.3
GTEX-WWYW-3126-SM-3NB39 32.3
GTEX-13O3Q-2926-SM-5KM45 31.9
GTEX-145MH-3026-SM-5Q5DZ 31.9
GTEX-XOTO-3026-SM-4B65M 31.3
GTEX-11GSO-2926-SM-5HL73 30.7
GTEX-1128S-2726-SM-5H12C 30.6
GTEX-WHSE-3026-SM-3P5ZH 30.5
GTEX-Q2AG-2926-SM-2HMJ3 30.4
GTEX-13OVH-3026-SM-5MR4N 30.3
GTEX-XLM4-3026-SM-4AT6L 30.3
GTEX-1313W-3126-SM-5LZUI 30.0
GTEX-145MF-2726-SM-5O995 29.8
GTEX-R55F-1326-SM-5S2V4 29.7
GTEX-TSE9-3026-SM-3DB76 29.6
GTEX-ZE7O-3126-SM-5HL5X 29.5
GTEX-12ZZY-3026-SM-5GCOU 28.9
GTEX-13VXU-2926-SM-5LU5C 28.8
GTEX-ZAK1-3026-SM-5S2MJ 28.6
GTEX-YFC4-3126-SM-5PNV6 28.5
GTEX-ZZPT-3026-SM-5GZXH 28.2
GTEX-13JUV-2926-SM-5LZX7 27.9
GTEX-145MG-3026-SM-5RQJA 27.6
GTEX-PVOW-2526-SM-2XCF7 27.5
GTEX-Y8DK-0826-SM-4TT3T 27.5
GTEX-QMR6-1426-SM-32PLA 27.3
GTEX-11OC5-0726-SM-5P9JK 27.1
GTEX-13QIC-2926-SM-5J2NF 27.1
GTEX-13NYB-3026-SM-5IJD7 26.9
GTEX-1192X-3126-SM-5N9BY 26.8
GTEX-13FLW-1426-SM-5K7YE 26.8
GTEX-11DXY-3226-SM-5GIDE 26.7
GTEX-14A5I-2926-SM-5Q5CQ 26.4
GTEX-1399T-3026-SM-5KLZC 26.3
GTEX-ZVT3-3026-SM-5E43N 26.3
GTEX-11EI6-3026-SM-5GZZO 26.2
GTEX-11EMC-3226-SM-5EGKW 26.2
GTEX-131XW-3126-SM-5LZUC 26.0
GTEX-145LS-3126-SM-5Q5BY 26.0
GTEX-11DXW-1126-SM-5H12Q 25.7
GTEX-12WSD-3126-SM-5HL7P 25.6
GTEX-11OF3-2926-SM-5HL78 25.3
GTEX-13S7M-3126-SM-5RQJQ 25.1
GTEX-NPJ8-1526-SM-2D7VU 24.7
GTEX-12ZZW-2926-SM-5LZUP 24.5
GTEX-12ZZZ-3026-SM-5BC67 24.5
GTEX-13O3O-3126-SM-5KM3H 24.4
GTEX-13PL6-3126-SM-5LUAR 24.4
GTEX-132Q8-3026-SM-5PNVG 23.9
GTEX-13SLX-3126-SM-5S2Q5 23.9
GTEX-RU72-3026-SM-5SI7Y 23.9
GTEX-13FHO-3026-SM-5J1O9 23.8
GTEX-QVUS-2826-SM-3GADB 23.7
GTEX-111FC-3126-SM-5GZZ2 23.2
GTEX-13NYS-3126-SM-5KLYV 23.0
GTEX-13FHP-3026-SM-5IJBS 22.9
GTEX-13X6J-3026-SM-5Q5CU 22.9
GTEX-11ONC-2926-SM-5P9JM 22.8
GTEX-QDT8-2926-SM-32PKC 22.4
GTEX-12WSH-3026-SM-5CVNI 21.8
GTEX-13OW8-2826-SM-5L3GC 21.6
GTEX-1117F-3226-SM-5N9CT 21.2
GTEX-11GS4-3126-SM-5A5LH 21.1
GTEX-UTHO-3026-SM-3GAFB 21.1
GTEX-NPJ7-2726-SM-2I3FT 20.6
GTEX-147GR-3026-SM-5S2ML 20.5
GTEX-OXRN-2426-SM-2I5EQ 19.3
GTEX-139T8-1026-SM-5J2MC 18.4
GTEX-13JVG-3126-SM-5L3FH 18.2
GTEX-12WSA-2926-SM-5EQ4D 17.4
GTEX-11GSP-3226-SM-5986O 16.9
GTEX-11WQK-3026-SM-5EQL6 16.9
GTEX-13IVO-2926-SM-5L3CZ 16.6
GTEX-ZAJG-3126-SM-5HL9J 16.6
GTEX-11O72-2926-SM-5BC4V 16.4
GTEX-13OW7-3026-SM-5L3GY 15.9
GTEX-N7MT-1126-SM-5SI7V 15.9
GTEX-144FL-3026-SM-5O99C 15.8
GTEX-13PVQ-3026-SM-5SI93 15.5
GTEX-13G51-3026-SM-5IJB8 14.5
GTEX-11TTK-2926-SM-5PNYP 14.3
GTEX-13OVJ-2826-SM-5L3GW 14.1
GTEX-PWO3-0926-SM-2I5EY 13.0
GTEX-1445S-3026-SM-5O9BR 12.1
Show all
 

Brain - Frontal Cortex (BA9)

Brain - Frontal Cortex (BA9)
RPKM: 23.7
Samples: 108

Max RPKM: 37.1
Min RPKM: 9.7
Std RPKM: 6.5
Median RPKM: 23.7
GTEX-Z93S-0011-R10a-SM-4RGNM 37.1
GTEX-T5JC-0011-R10A-SM-32PM2 36.8
GTEX-X585-0011-R10A-SM-46MUY 36.7
GTEX-13OW6-0011-R10a-SM-5L3HE 35.0
GTEX-YJ89-0011-R10a-SM-4SOK9 35.0
GTEX-131YS-0011-R10b-SM-5EQ5N 33.8
GTEX-13FXS-0011-R10a-SM-5J2MA 33.6
GTEX-12WSE-0011-R10b-SM-5P9JV 33.3
GTEX-12126-0011-R10b-SM-5BC6T 32.2
GTEX-14ASI-0011-R10b-SM-5S2VZ 32.2
GTEX-12ZZY-0011-R10b-SM-5HL7W 32.1
GTEX-Q2AG-0011-R10A-SM-2HMLA 32.0
GTEX-13OW7-0011-R10a-SM-5L3H3 31.8
GTEX-12ZZZ-0011-R10a-SM-5P9HC 31.5
GTEX-1313W-0011-R10b-SM-5DUXA 31.5
GTEX-12WSF-0011-R10a-SM-5LZVH 31.3
GTEX-X4XX-0011-R10B-SM-46MWO 31.3
GTEX-12WSC-0011-R10a-SM-5GU57 30.8
GTEX-WL46-0011-R10A-SM-3MJFQ 30.6
GTEX-131XH-0011-R10a-SM-5EGLJ 30.3
GTEX-N7MS-0011-R10A-SM-2HMJK 30.0
GTEX-12WSM-0011-R10a-SM-5DUWV 29.5
GTEX-12ZZX-0011-R10b-SM-5DUWK 29.4
GTEX-13OVL-0011-R10a-SM-5L3GS 29.1
GTEX-XLM4-0011-R10A-SM-4AT5P 28.9
GTEX-13O3Q-0011-R10b-SM-5KM39 28.8
GTEX-11ZUS-0011-R10b-SM-5BC79 28.4
GTEX-T6MN-0011-R10A-SM-32QP7 28.1
GTEX-13X6K-0011-R10a-SM-5P9JR 28.0
GTEX-11H98-0011-R10b-SM-5NQ98 27.8
GTEX-13N1W-0011-R10b-SM-5MR4H 27.8
GTEX-TSE9-0011-R10A-SM-3DB7O 27.8
GTEX-WZTO-0011-R10B-SM-4E3KB 27.3
GTEX-145MH-0011-R10b-SM-5PNUK 27.1
GTEX-S7SE-0011-R10A-SM-2XCDF 27.1
GTEX-Y8DK-0011-R10A-SM-4SOK1 26.9
GTEX-WVLH-0011-R10A-SM-3MJFM 26.7
GTEX-13JUV-0011-R10b-SM-5LZXR 26.5
GTEX-QMR6-0011-R10A-SM-32PKO 25.7
GTEX-ZVT3-0011-R10b-SM-57WB6 25.5
GTEX-13X6J-0011-R10b-SM-5PNWA 25.4
GTEX-NL3H-0011-R10A-SM-2I3E9 25.4
GTEX-P44H-0011-R10A-SM-2XCEK 25.4
GTEX-13QIC-0011-R10a-SM-5O9C7 25.3
GTEX-YFC4-0011-R10a-SM-4SOK5 25.0
GTEX-QVJO-0011-R10A-SM-2S1QJ 24.9
GTEX-13FLV-0011-R10b-SM-5LZZ2 24.8
GTEX-14BIN-0011-R10a-SM-5S2UA 24.8
GTEX-13O3O-0011-R10a-SM-5LUA9 24.5
GTEX-145MG-0011-R10a-SM-5PNWG 24.5
GTEX-13FLW-0011-R10b-SM-5LZZF 24.4
GTEX-13G51-0011-R10b-SM-5LZYF 24.2
GTEX-13NYS-0011-R10a-SM-5MR4S 23.8
GTEX-12WSH-0011-R10a-SM-5LZUS 23.7
GTEX-13OW8-0011-R10a-SM-5L3H6 23.7
GTEX-14BIL-0011-R10a-SM-5SI75 23.7
GTEX-13FHO-0011-R10b-SM-5J2MM 23.6
GTEX-13S7M-0011-R10b-SM-5PNZB 23.6
GTEX-147F4-0011-R10b-SM-5S2WC 23.6
GTEX-ZVZQ-0011-R10b-SM-51MRT 23.6
GTEX-139TS-0011-R10a-SM-5K7TU 23.3
GTEX-147GR-0011-R10b-SM-5S2UM 23.3
GTEX-11WQC-0011-R10a-SM-57WCT 23.2
GTEX-ZF28-0011-R10a-SM-4WWEH 23.1
GTEX-145LS-0011-R10a-SM-5PNUQ 22.8
GTEX-NPJ8-0011-R10A-SM-2YUMO 22.6
GTEX-13FTZ-0011-R10b-SM-5KLZS 22.3
GTEX-13CZV-0011-R10b-SM-5LZYD 22.1
GTEX-ZDXO-0011-R10a-SM-4WWD8 21.8
GTEX-13RTJ-0011-R10b-SM-5O9CW 21.5
GTEX-ZUA1-0011-R10a-SM-51MT6 21.5
GTEX-13SLX-0011-R10a-SM-5P9HV 21.3
GTEX-ZXG5-0011-R10a-SM-57WDD 21.2
GTEX-13X6I-0011-R10a-SM-5PNWI 20.9
GTEX-WWYW-0011-R10A-SM-3NB35 20.9
GTEX-132Q8-0011-R10b-SM-5DUWZ 20.8
GTEX-NL4W-0011-R10A-SM-2I3DY 20.7
GTEX-ZAB4-0011-R10a-SM-4SOKH 20.7
GTEX-1477Z-0011-R10b-SM-5S2RF 20.0
GTEX-N7MT-0011-R10A-SM-2I3E1 19.7
GTEX-13SLW-0011-R10a-SM-5S2UI 19.5
GTEX-13NYB-0011-R10a-SM-5KM43 19.2
GTEX-13QJC-0011-R10a-SM-5SI63 19.2
GTEX-145LU-0011-R10a-SM-5PNWJ 18.8
GTEX-13NZA-0011-R10b-SM-5KM54 18.3
GTEX-NPJ7-0011-R10A-SM-2I3E5 17.9
GTEX-11GSP-0011-R10a-SM-5NQ7J 17.7
GTEX-RVPU-0011-R10A-SM-2XCAH 17.7
GTEX-OXRN-0011-R10A-SM-2I5GC 16.8
GTEX-QDT8-0011-R10A-SM-32PKG 16.7
GTEX-14753-0011-R10b-SM-5S2WE 16.6
GTEX-11WQK-0011-R10a-SM-5BC6R 15.8
GTEX-12ZZW-0011-R10b-SM-5HL9X 15.5
GTEX-X261-0011-R10B-SM-4E3JT 15.2
GTEX-12WSD-0011-R10b-SM-5GU79 15.0
GTEX-12WSA-0011-R10b-SM-5P9ET 14.9
GTEX-13N2G-0011-R10a-SM-5MR34 14.2
GTEX-X4EP-0011-R10B-SM-4QASJ 14.2
GTEX-QVUS-0011-R10A-SM-3GIK3 13.9
GTEX-13OVJ-0011-R10b-SM-5L3HT 13.5
GTEX-XMD1-0011-R10A-SM-4AT4A 13.0
GTEX-13IVO-0011-R10a-SM-5LZY3 11.6
GTEX-13JVG-0011-R10b-SM-5KM2P 11.6
GTEX-ZV68-0011-R10a-SM-51MT7 11.3
GTEX-1445S-0011-R10a-SM-5PNWB 11.2
GTEX-OXRO-0011-R10A-SM-2I5EH 10.1
GTEX-131XW-0011-R10a-SM-5DUVA 10.0
GTEX-ZE7O-0011-R10a-SM-57WAZ 9.7
Show all

CEREBRAL CORTEX - FANTOM5 CAGE

No Fantom CAGE analysis found for this gene / tissue

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