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Gene name

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Chromosome

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Reliability

Reliability

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Method

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Method

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Searches

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Expression

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Specificity

Cell line

Specificity

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Detectable

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Antibodies

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RRBP1
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TISSUE ATLAS PRIMARY DATA

GENE/PROTEIN

Antibody validation


Dictionary


Tissue proteome

GENERAL INFORMATION

Gene name

RRBP1

Gene description

Ribosome binding protein 1

Protein class

Plasma proteins
Predicted intracellular proteins
Predicted membrane proteins

Predicted localization

Intracellular,Membrane

Number of transcripts

8
SHOW MORE

HUMAN PROTEIN ATLAS INFORMATION

RNA tissue category

HPA:Expressed in all
GTEx:Expressed in all
FANTOM5:Expressed in all

Protein evidence

Evidence at protein level

Protein expression

Cytoplasmic expression in all tissues.

DATA RELIABILITY

Data reliability
description

Antibody staining consistent with RNA expression data.

Reliability score

Supported based on 2 antibodies.
HPA009026 , HPA011924
SHOW MORE

RNA AND PROTEIN EXPRESSION SUMMARY

RNA expression (TPM) Protein expression (score)
Brain
Cerebral cortex
Hippocampus
N/A
Caudate
N/A
Cerebellum
N/A
Endocrine tissues
Thyroid gland
Parathyroid gland
Adrenal gland
Bone marrow & immune system
Appendix
Bone marrow
Lymph node
Tonsil
Spleen
Muscle tissues
Heart muscle
Skeletal muscle
Smooth muscle
Lung
Nasopharynx
N/A
Bronchus
N/A
Lung
Liver & gallbladder
Liver
Gallbladder
Pancreas
Pancreas
Gastrointestinal tract
Oral mucosa
N/A
Salivary gland
Esophagus
Stomach
Duodenum
Small intestine
Colon
Rectum
Kidney & urinary bladder
Kidney
Urinary bladder
Male tissues
Testis
Epididymis
Prostate
Seminal vesicle
Female tissues
Breast
Vagina
N/A
Cervix, uterine
Endometrium
Fallopian tube
Ovary
Placenta
Adipose & soft tissue
Adipose tissue
Soft tissue
N/A
Skin
Skin
Cerebral cortex

Lymph node

Liver

Colon

Kidney

Testis

Fallopian tube

PROTEIN EXPRESSION OVERVIEW

Organ
Expression
Alphabetical

RNA EXPRESSION OVERVIEW

HPA dataset
Organ
Expression
Alphabetical
RNA tissue category: Expressed in all
GTEx dataset
Organ
Expression
Alphabetical
RNA tissue category: Expressed in all
FANTOM5 dataset
Organ
Expression
Alphabetical
RNA tissue category: Expressed in all

GENE INFORMATION

Gene name

RRBP1 (HGNC Symbol)

Synonyms

ES/130, hES

Description

Ribosome binding protein 1 (HGNC Symbol)

Entrez gene summary

This gene encodes a ribosome-binding protein of the endoplasmic reticulum (ER) membrane. Studies suggest that this gene plays a role in ER proliferation, secretory pathways and secretory cell differentiation, and mediation of ER-microtubule interactions. Alternative splicing has been observed and protein isoforms are characterized by regions of N-terminal decapeptide and C-terminal heptad repeats. Splicing of the tandem repeats results in variations in ribosome-binding affinity and secretory function. The full-length nature of variants which differ in repeat length has not been determined. Pseudogenes of this gene have been identified on chromosomes 3 and 7, and RRBP1 has been excluded as a candidate gene in the cause of Alagille syndrome, the result of a mutation in a nearby gene on chromosome 20p12. [provided by RefSeq, Apr 2012]

Chromosome

20

Cytoband

p12.1

Chromosome location (bp)

17613678 - 17682295

Protein evidence

Evidence at protein level (all genes)

Ensembl

ENSG00000125844 (version 83.38)

Entrez gene

6238

UniProt

Q9P2E9 (UniProt - Evidence at protein level)

neXtProt

NX_Q9P2E9

Antibodypedia

RRBP1 antibodies

PROTEIN BROWSER

RRBP1-001
RRBP1-002
RRBP1-003
RRBP1-005
RRBP1-007
RRBP1-201
RRBP1-202
RRBP1-203

PROTEIN INFORMATION

Splice variant

UniProt

Protein class

Gene ontology

Length & mass

Signal peptide
(predicted)

Transmembrane regions
(predicted)

RRBP1-001
ENSP00000354045
ENST00000360807
Q9P2E9 [Direct mapping]
Ribosome-binding protein 1
Show all
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   1TM proteins predicted by MDM
Plasma proteins
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0001649 [osteoblast differentiation]
GO:0004872 [receptor activity]
GO:0005783 [endoplasmic reticulum]
GO:0005840 [ribosome]
GO:0006412 [translation]
GO:0015031 [protein transport]
GO:0016020 [membrane]
GO:0030176 [integral component of endoplasmic reticulum membrane]
GO:0044822 [poly(A) RNA binding]
Show all
977 aa
108.6 kDa
No 1
RRBP1-002
ENSP00000367044
ENST00000377813
A0A0A0MRV0 [Direct mapping]
Ribosome-binding protein 1
Show all
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   1TM proteins predicted by MDM
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0015031 [protein transport]
GO:0030176 [integral component of endoplasmic reticulum membrane]
Show all
1410 aa
152.5 kDa
No 1
RRBP1-003
ENSP00000381762
ENST00000398782
A2A2S5 [Direct mapping]
Ribosome-binding protein 1
Show all
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   SPOCTOPUS predicted secreted proteins
Predicted intracellular proteins
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0015031 [protein transport]
GO:0030176 [integral component of endoplasmic reticulum membrane]
Show all
300 aa
31.7 kDa
No 0
RRBP1-005
ENSP00000478324
ENST00000470422
A0A087WU26 [Direct mapping]
Ribosome-binding protein 1
Show all
   Phobius predicted secreted proteins
Predicted intracellular proteins
Protein evidence (Ezkurdia et al 2014)
Show all
346 aa
38.7 kDa
No 0
RRBP1-007
ENSP00000401206
ENST00000455029
F8W7S5 [Direct mapping]
Ribosome-binding protein 1
Show all
Predicted intracellular proteins
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005783 [endoplasmic reticulum]
Show all
751 aa
84.3 kDa
No 0
RRBP1-201
ENSP00000246043
ENST00000246043
A0A0A0MRV0 [Direct mapping]
Ribosome-binding protein 1
Show all
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   1TM proteins predicted by MDM
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0015031 [protein transport]
GO:0030176 [integral component of endoplasmic reticulum membrane]
Show all
1410 aa
152.5 kDa
No 1
RRBP1-202
ENSP00000367038
ENST00000377807
Q9P2E9 [Direct mapping]
Ribosome-binding protein 1
Show all
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   1TM proteins predicted by MDM
Plasma proteins
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0001649 [osteoblast differentiation]
GO:0004872 [receptor activity]
GO:0005515 [protein binding]
GO:0005783 [endoplasmic reticulum]
GO:0005840 [ribosome]
GO:0006412 [translation]
GO:0015031 [protein transport]
GO:0016020 [membrane]
GO:0030176 [integral component of endoplasmic reticulum membrane]
GO:0044822 [poly(A) RNA binding]
Show all
977 aa
108.6 kDa
No 1
RRBP1-203
ENSP00000479709
ENST00000610403
A0A087WVV2 [Direct mapping]
Ribosome-binding protein 1
Show all
Predicted intracellular proteins
Protein evidence (Ezkurdia et al 2014)
Show all
934 aa
102.8 kDa
No 0

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