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TISSUE ATLAS PRIMARY DATA CAUDATE
MOUSE BRAIN

GENE/PROTEIN

Antibody validation


Dictionary

Caudate

CAUDATE - Expression summary

Protein expression

h
m
l
n

RNA expression

GTEx:1139.9RPKM
FANTOM5:2326.6Tags Per Million

CAUDATE - Annotated protein expression

Annotated protein
expression

Glial cells:Medium
Neuronal cells:Not detected
 

Antibody staining

Antibody HPA056030

 

Antibody HPA063513

 

Antibody CAB000039

 

Glial cells

Medium   Low   Medium  

Neuronal cells

Not detected   Not detected   Not detected  
     
     
     

CAUDATE - HPA RNA-seq

Pending HPA RNA-seq analysis


CAUDATE - GTEx RNA-seq

Average RPKM

1139.9

GTEx sample id

RPKM

 

Brain - Caudate (basal ganglia)

Brain - Caudate (basal ganglia)
RPKM: 1139.9
Samples: 117

Max RPKM: 4930.2
Min RPKM: 46.4
Std RPKM: 832.4
Median RPKM: 972
GTEX-132Q8-0011-R5a-SM-5IJDM 4930.2
GTEX-NPJ8-0011-R5a-SM-2HMJY 4499.3
GTEX-OHPN-0011-R5A-SM-2I5FF 3892.3
GTEX-12WSA-0011-R5b-SM-5GU5I 3058.2
GTEX-13JUV-0011-R5a-SM-5LZY5 2940.6
GTEX-XMD1-0011-R5A-SM-4AT47 2834.9
GTEX-144GO-0011-R5a-SM-5PNUR 2619.7
GTEX-13NYS-0011-R5a-SM-5MR4D 2559.4
GTEX-N7MT-0011-R5a-SM-2I3G6 2452.4
GTEX-12WSB-0011-R5b-SM-5GU67 2419.4
GTEX-RVPV-0011-R5A-SM-2TF69 2329.9
GTEX-13X6I-0011-R5a-SM-5PNWW 2306.4
GTEX-NL4W-0011-R5a-SM-2I3GD 2165.6
GTEX-X4XX-0011-R5A-SM-46MWN 2062.5
GTEX-13OVJ-0011-R5a-SM-5P9H7 1928.2
GTEX-NL3H-0011-R5a-SM-2I3GB 1884.1
GTEX-13JVG-0011-R5a-SM-5MR4O 1874.4
GTEX-13X6K-0011-R5b-SM-5PNUE 1865.1
GTEX-13PLJ-0011-R5a-SM-5O9BG 1830.7
GTEX-NPJ7-0011-R5a-SM-33HBK 1815.0
GTEX-ZVT3-0011-R5a-SM-51MSI 1681.2
GTEX-1399T-0011-R5b-SM-5IJDK 1532.8
GTEX-139TS-0011-R5b-SM-5J2MZ 1429.4
GTEX-1477Z-0011-R5b-SM-5PNUO 1398.8
GTEX-YJ89-0011-R5a-SM-4V6GM 1395.2
GTEX-13N1W-0011-R5b-SM-5MR5Q 1390.2
GTEX-WHSE-0011-R5A-SM-3P5ZO 1380.2
GTEX-13OW5-0011-R5b-SM-5L3FR 1364.7
GTEX-12WSH-0011-R5b-SM-5P9F3 1337.8
GTEX-12WSF-0011-R5a-SM-5HL8K 1334.5
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 1334.4
GTEX-RVPU-0011-R5A-SM-2XCAD 1329.6
GTEX-13S7M-0011-R5b-SM-5P9HS 1317.2
GTEX-QVJO-0011-R5A-SM-2S1QM 1306.1
GTEX-ZF28-0011-R5a-SM-4WWCZ 1305.6
GTEX-ZV68-0011-R5a-SM-4YCDW 1292.6
GTEX-PWO3-0011-R5A-SM-2I5EZ 1281.0
GTEX-11GSP-0011-R5a-SM-57WBE 1280.3
GTEX-1445S-0011-R5a-SM-5PNUS 1267.2
GTEX-13OW8-0011-R5b-SM-5L3FQ 1243.0
GTEX-WL46-0011-R5A-SM-3LK6V 1233.5
GTEX-13OW6-0011-R5a-SM-5O9BK 1206.7
GTEX-X261-0011-R5A-SM-3NMB4 1181.7
GTEX-14BIM-0011-R5b-SM-5S2RM 1172.0
GTEX-Y8DK-0011-R5B-SM-4RTW6 1153.8
GTEX-13SLW-0011-R5b-SM-5SI6Z 1144.7
GTEX-RU72-0011-R5A-SM-2TF6U 1104.1
GTEX-13RTJ-0011-R5a-SM-5P9HR 1084.7
GTEX-11UD1-0011-R5b-SM-5P9FP 1076.6
GTEX-13PVQ-0011-R5b-SM-5O9DI 1069.3
GTEX-13OVH-0011-R5b-SM-5KM4L 1067.7
GTEX-ZE7O-0011-R5a-SM-57WBO 1066.8
GTEX-11WQC-0011-R5a-SM-5BC74 1059.0
GTEX-YFC4-0011-R5a-SM-4RGLR 1058.9
GTEX-11OF3-0011-R5a-SM-57WB4 1047.3
GTEX-WWYW-0011-R5A-SM-3NB3E 1012.8
GTEX-13G51-0011-R5a-SM-5L3EB 1004.7
GTEX-ZE9C-0011-R5a-SM-5EGLO 992.8
GTEX-13FLW-0011-R5a-SM-5LZX6 972.0
GTEX-13NZA-0011-R5b-SM-5KM4K 930.8
GTEX-139TT-0011-R5b-SM-5K7W8 909.4
GTEX-13FLV-0011-R5a-SM-5LZWT 905.1
GTEX-OXRN-0011-R5A-SM-2I5EF 901.1
GTEX-S7SE-0011-R5A-SM-2XCDA 895.0
GTEX-Q2AG-0011-R5A-SM-2HMJH 878.3
GTEX-S7PM-0011-R5A-SM-3NM8G 867.2
GTEX-13CZV-0011-R5a-SM-5K7XA 859.5
GTEX-QMR6-0011-R5A-SM-32PKT 852.3
GTEX-X585-0011-R5A-SM-46MVI 835.9
GTEX-12ZZX-0011-R5a-SM-5HL89 833.0
GTEX-145LS-0011-R5a-SM-5SI65 778.4
GTEX-11H98-0011-R5b-SM-57WCF 739.4
GTEX-ZVZQ-0011-R5b-SM-57WDC 733.3
GTEX-13VXU-0011-R5a-SM-5O9D7 732.1
GTEX-13CF2-0011-R5a-SM-5LZWS 704.4
GTEX-ZXG5-0011-R5b-SM-57WBN 696.6
GTEX-12ZZY-0011-R5a-SM-5EGL9 686.5
GTEX-UTHO-0011-R5A-SM-3GIJD 679.3
GTEX-XOTO-0011-R5A-SM-4B657 674.5
GTEX-13FHO-0011-R5b-SM-5LZZ3 660.3
GTEX-13OVL-0011-R5b-SM-5L3FU 635.1
GTEX-13SLX-0011-R5a-SM-5O9BV 622.5
GTEX-ZAB4-0011-R5a-SM-4SOKC 618.3
GTEX-P44H-0011-R5A-SM-2XCEX 616.9
GTEX-13OW7-0011-R5b-SM-5O9DM 615.8
GTEX-TSE9-0011-R5A-SM-3DB7J 612.3
GTEX-13O3Q-0011-R5b-SM-5P9H4 610.3
GTEX-12WSC-0011-R5b-SM-5CVNS 609.0
GTEX-12WSM-0011-R5a-SM-5EQ4Y 583.6
GTEX-12ZZW-0011-R5a-SM-5DUVN 569.9
GTEX-11NV4-0011-R5a-SM-5NQ88 562.5
GTEX-12WSD-0011-R5b-SM-5CVNG 561.9
GTEX-13CIG-0011-R5b-SM-5L3F2 535.3
GTEX-T6MN-0011-R5A-SM-32QPD 521.0
GTEX-Z93S-0011-R5b-SM-4RGNI 511.6
GTEX-ZUA1-0011-R5b-SM-51MTG 464.4
GTEX-14BIN-0011-R5b-SM-5SI78 459.3
GTEX-145MG-0011-R5b-SM-5S2VU 449.4
GTEX-144GL-0011-R5b-SM-5PNUJ 439.6
GTEX-N7MS-0011-R5a-SM-2HMK8 435.7
GTEX-131YS-0011-R5b-SM-5K7YB 426.7
GTEX-13O3O-0011-R5b-SM-5KM44 410.9
GTEX-PVOW-0011-R5A-SM-32PL7 403.5
GTEX-14ABY-0011-R5b-SM-5SI7B 400.9
GTEX-13X6J-0011-R5b-SM-5PNWT 385.7
GTEX-13112-0011-R5b-SM-5DUV8 369.3
GTEX-T5JC-0011-R5A-SM-32PLK 367.3
GTEX-145MH-0011-R5a-SM-5P9JT 359.5
GTEX-13NYB-0011-R5a-SM-5MR45 352.3
GTEX-WZTO-0011-R5B-SM-3NMC5 352.1
GTEX-WVLH-0011-R5A-SM-3MJFW 327.6
GTEX-13FXS-0011-R5b-SM-5LZYE 305.8
GTEX-1313W-0011-R5b-SM-5L3EP 304.0
GTEX-13FHP-0011-R5b-SM-5LZY2 290.6
GTEX-R55E-0011-R5A-SM-2TC5N 185.7
GTEX-139T8-0011-R5b-SM-5J1MO 111.1
GTEX-T2IS-0011-R5A-SM-32QP4 46.4
Show all

CAUDATE - FANTOM5 CAGE

Average Tags Per Million

2326.6

FANTOM5 sample id

Sample description

Tags Per Million

Caudate nucleus
Tags Per Million: 2326.6
FF:10164-103B2 76 years, female 2693.2
FF:10379-105H1 89 years, female 1960.0

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