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TISSUE ATLAS PRIMARY DATA CAUDATE

GENE/PROTEIN

Antibody validation


Dictionary

Caudate

CAUDATE - Expression summary

Protein expression

h
m
l
n

RNA expression

GTEx:8.3RPKM
FANTOM5:111.3Tags Per Million

CAUDATE - Annotated protein expression

Annotated protein
expression

Glial cells:Medium
Neuronal cells:High
 

Antibody staining

Antibody HPA028402

 

Antibody HPA043443

 

Glial cells

Medium   Not detected  

Neuronal cells

High   Medium  
   
   
   

CAUDATE - HPA RNA-seq

Pending HPA RNA-seq analysis


CAUDATE - GTEx RNA-seq

Average RPKM

8.3

GTEx sample id

RPKM

 

Brain - Caudate (basal ganglia)

Brain - Caudate (basal ganglia)
RPKM: 8.3
Samples: 117

Max RPKM: 28.8
Min RPKM: 1.4
Std RPKM: 4
Median RPKM: 7.8
GTEX-T2IS-0011-R5A-SM-32QP4 28.8
GTEX-P44H-0011-R5A-SM-2XCEX 20.4
GTEX-PVOW-0011-R5A-SM-32PL7 18.5
GTEX-UTHO-0011-R5A-SM-3GIJD 17.7
GTEX-131YS-0011-R5b-SM-5K7YB 15.5
GTEX-QVJO-0011-R5A-SM-2S1QM 15.2
GTEX-13G51-0011-R5a-SM-5L3EB 14.8
GTEX-ZAB4-0011-R5a-SM-4SOKC 14.4
GTEX-T6MN-0011-R5A-SM-32QPD 13.9
GTEX-WHSE-0011-R5A-SM-3P5ZO 13.7
GTEX-Q2AG-0011-R5A-SM-2HMJH 12.6
GTEX-QMR6-0011-R5A-SM-32PKT 12.5
GTEX-Z93S-0011-R5b-SM-4RGNI 12.5
GTEX-S7SE-0011-R5A-SM-2XCDA 12.4
GTEX-12WSC-0011-R5b-SM-5CVNS 12.2
GTEX-11OF3-0011-R5a-SM-57WB4 12.1
GTEX-1313W-0011-R5b-SM-5L3EP 12.1
GTEX-WVLH-0011-R5A-SM-3MJFW 11.9
GTEX-N7MS-0011-R5a-SM-2HMK8 11.8
GTEX-WZTO-0011-R5B-SM-3NMC5 11.8
GTEX-1399T-0011-R5b-SM-5IJDK 11.2
GTEX-14ABY-0011-R5b-SM-5SI7B 11.2
GTEX-WL46-0011-R5A-SM-3LK6V 11.2
GTEX-14BIM-0011-R5b-SM-5S2RM 11.1
GTEX-145MH-0011-R5a-SM-5P9JT 10.9
GTEX-WWYW-0011-R5A-SM-3NB3E 10.8
GTEX-12WSF-0011-R5a-SM-5HL8K 10.7
GTEX-13O3O-0011-R5b-SM-5KM44 10.7
GTEX-R55E-0011-R5A-SM-2TC5N 10.7
GTEX-13X6J-0011-R5b-SM-5PNWT 10.4
GTEX-13FHO-0011-R5b-SM-5LZZ3 10.3
GTEX-145LS-0011-R5a-SM-5SI65 10.3
GTEX-13O3Q-0011-R5b-SM-5P9H4 10.1
GTEX-ZUA1-0011-R5b-SM-51MTG 10.0
GTEX-11GSP-0011-R5a-SM-57WBE 9.9
GTEX-T5JC-0011-R5A-SM-32PLK 9.8
GTEX-X585-0011-R5A-SM-46MVI 9.8
GTEX-12ZZY-0011-R5a-SM-5EGL9 9.6
GTEX-13N1W-0011-R5b-SM-5MR5Q 9.5
GTEX-13VXU-0011-R5a-SM-5O9D7 9.5
GTEX-N7MT-0011-R5a-SM-2I3G6 9.3
GTEX-RU72-0011-R5A-SM-2TF6U 9.2
GTEX-13X6K-0011-R5b-SM-5PNUE 9.1
GTEX-11H98-0011-R5b-SM-57WCF 9.0
GTEX-139TT-0011-R5b-SM-5K7W8 9.0
GTEX-11NV4-0011-R5a-SM-5NQ88 8.9
GTEX-13X6I-0011-R5a-SM-5PNWW 8.6
GTEX-RVPU-0011-R5A-SM-2XCAD 8.6
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 8.5
GTEX-13RTJ-0011-R5a-SM-5P9HR 8.5
GTEX-13SLX-0011-R5a-SM-5O9BV 8.5
GTEX-12WSM-0011-R5a-SM-5EQ4Y 8.4
GTEX-13FXS-0011-R5b-SM-5LZYE 8.4
GTEX-132Q8-0011-R5a-SM-5IJDM 8.2
GTEX-13S7M-0011-R5b-SM-5P9HS 8.1
GTEX-X4XX-0011-R5A-SM-46MWN 8.0
GTEX-Y8DK-0011-R5B-SM-4RTW6 8.0
GTEX-13CZV-0011-R5a-SM-5K7XA 7.8
GTEX-ZE9C-0011-R5a-SM-5EGLO 7.8
GTEX-12WSB-0011-R5b-SM-5GU67 7.6
GTEX-13OVL-0011-R5b-SM-5L3FU 7.5
GTEX-RVPV-0011-R5A-SM-2TF69 7.5
GTEX-13JUV-0011-R5a-SM-5LZY5 7.4
GTEX-13OW6-0011-R5a-SM-5O9BK 7.3
GTEX-TSE9-0011-R5A-SM-3DB7J 7.2
GTEX-13FLW-0011-R5a-SM-5LZX6 6.9
GTEX-XMD1-0011-R5A-SM-4AT47 6.9
GTEX-NL4W-0011-R5a-SM-2I3GD 6.8
GTEX-12WSD-0011-R5b-SM-5CVNG 6.6
GTEX-13OW7-0011-R5b-SM-5O9DM 6.6
GTEX-13OVH-0011-R5b-SM-5KM4L 6.5
GTEX-13SLW-0011-R5b-SM-5SI6Z 6.5
GTEX-OHPN-0011-R5A-SM-2I5FF 6.5
GTEX-12WSA-0011-R5b-SM-5GU5I 6.4
GTEX-ZE7O-0011-R5a-SM-57WBO 6.4
GTEX-XOTO-0011-R5A-SM-4B657 6.3
GTEX-13OW8-0011-R5b-SM-5L3FQ 6.2
GTEX-NPJ8-0011-R5a-SM-2HMJY 6.2
GTEX-PWO3-0011-R5A-SM-2I5EZ 6.2
GTEX-OXRN-0011-R5A-SM-2I5EF 6.1
GTEX-12ZZW-0011-R5a-SM-5DUVN 6.0
GTEX-ZF28-0011-R5a-SM-4WWCZ 6.0
GTEX-ZXG5-0011-R5b-SM-57WBN 6.0
GTEX-YFC4-0011-R5a-SM-4RGLR 5.9
GTEX-NL3H-0011-R5a-SM-2I3GB 5.8
GTEX-13NYB-0011-R5a-SM-5MR45 5.6
GTEX-13OW5-0011-R5b-SM-5L3FR 5.6
GTEX-14BIN-0011-R5b-SM-5SI78 5.6
GTEX-13FLV-0011-R5a-SM-5LZWT 5.5
GTEX-13NYS-0011-R5a-SM-5MR4D 5.5
GTEX-11WQC-0011-R5a-SM-5BC74 5.3
GTEX-12ZZX-0011-R5a-SM-5HL89 5.3
GTEX-NPJ7-0011-R5a-SM-33HBK 5.3
GTEX-139T8-0011-R5b-SM-5J1MO 5.1
GTEX-12WSH-0011-R5b-SM-5P9F3 5.0
GTEX-13CIG-0011-R5b-SM-5L3F2 4.9
GTEX-13JVG-0011-R5a-SM-5MR4O 4.9
GTEX-ZVZQ-0011-R5b-SM-57WDC 4.7
GTEX-13OVJ-0011-R5a-SM-5P9H7 4.4
GTEX-144GO-0011-R5a-SM-5PNUR 4.3
GTEX-13PVQ-0011-R5b-SM-5O9DI 4.1
GTEX-139TS-0011-R5b-SM-5J2MZ 4.0
GTEX-1445S-0011-R5a-SM-5PNUS 3.9
GTEX-144GL-0011-R5b-SM-5PNUJ 3.9
GTEX-ZVT3-0011-R5a-SM-51MSI 3.9
GTEX-X261-0011-R5A-SM-3NMB4 3.8
GTEX-YJ89-0011-R5a-SM-4V6GM 3.8
GTEX-13112-0011-R5b-SM-5DUV8 3.7
GTEX-13PLJ-0011-R5a-SM-5O9BG 3.7
GTEX-ZV68-0011-R5a-SM-4YCDW 3.7
GTEX-13FHP-0011-R5b-SM-5LZY2 3.3
GTEX-S7PM-0011-R5A-SM-3NM8G 3.2
GTEX-13CF2-0011-R5a-SM-5LZWS 2.7
GTEX-1477Z-0011-R5b-SM-5PNUO 2.7
GTEX-11UD1-0011-R5b-SM-5P9FP 2.6
GTEX-13NZA-0011-R5b-SM-5KM4K 1.8
GTEX-145MG-0011-R5b-SM-5S2VU 1.4
Show all

CAUDATE - FANTOM5 CAGE

Average Tags Per Million

111.3

FANTOM5 sample id

Sample description

Tags Per Million

Caudate nucleus
Tags Per Million: 111.3
FF:10164-103B2 76 years, female 125.6
FF:10379-105H1 89 years, female 97.0

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