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TISSUE ATLAS PRIMARY DATA CEREBELLUM

GENE/PROTEIN

Antibody validation


Dictionary

Cerebellum

CEREBELLUM - Expression summary

Protein expressioni

The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.

h
m
l
n

RNA expressioni

RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.

Read more

GTEx:17.8RPKM
FANTOM5:11.4Tags Per Million

CEREBELLUM - Annotated protein expressioni

The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.

Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.

The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.

For histological reference, view the histological dictionary.

Annotated protein
expression

Cells in granular layer:Not detected
Cells in molecular layer:Not detected
Purkinje cells:Not detected
 

Antibody stainingi

This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.

Read more

Antibody CAB017467

 

Cells in granular layer

Not detected  

Cells in molecular layer

Not detected  

Purkinje cells

Not detected  
 
 
 

CEREBELLUM - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.

Read more

Pending HPA RNA-seq analysis


CEREBELLUM - GTEx RNA-seqi

RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.

Read more

Average RPKM

17.8

GTEx sample id

RPKM

 

Brain - Cerebellar Hemisphere

Brain - Cerebellar Hemisphere
RPKM: 18.1
Samples: 105

Max RPKM: 36.2
Min RPKM: 4.6
Std RPKM: 5.3
Median RPKM: 18.4
GTEX-NL3H-0011-R11A-SM-2I3E6 36.2
GTEX-T2IS-0011-R11A-SM-32QPC 30.5
GTEX-X4XX-0011-R11A-SM-46MWQ 28.7
GTEX-12WSH-0011-R11a-SM-5LZVM 28.3
GTEX-13NYS-0011-R11b-SM-5MR4P 28.0
GTEX-12WSM-0011-R11a-SM-5DUX8 27.0
GTEX-11OF3-0011-R11a-SM-57WCR 26.7
GTEX-14BIM-0011-R11b-SM-5S2RN 26.4
GTEX-UTHO-0011-R11A-SM-3GIJE 25.5
GTEX-11H98-0011-R11b-SM-5NQ6U 25.3
GTEX-YFC4-0011-R11a-SM-4SOK6 25.1
GTEX-13N2G-0011-R11a-SM-5MR3F 24.5
GTEX-13OW5-0011-R11b-SM-5L3GG 24.5
GTEX-TSE9-0011-R11A-SM-3DB7N 24.3
GTEX-13FXS-0011-R11a-SM-5L3DM 24.2
GTEX-X585-0011-R11B-SM-46MUZ 24.2
GTEX-X261-0011-R11A-SM-4E3JY 23.7
GTEX-13NYB-0011-R11a-SM-5KM3Q 22.8
GTEX-RU72-0011-R11A-SM-5SI8G 22.7
GTEX-NPJ8-0011-R11A-SM-2YUMS 22.6
GTEX-13CF2-0011-R11b-SM-5LZXO 22.3
GTEX-ZDXO-0011-R11a-SM-4WWD9 21.7
GTEX-QMR6-0011-R11A-SM-32PKK 21.5
GTEX-13S7M-0011-R11b-SM-5P9HU 21.4
GTEX-YJ89-0011-R11a-SM-4SOKA 21.4
GTEX-12ZZZ-0011-R11a-SM-5EGLC 21.3
GTEX-13O3O-0011-R11b-SM-5KM4G 21.3
GTEX-Z93S-0011-R11a-SM-4RGNN 21.3
GTEX-11GSP-0011-R11b-SM-5NQ7V 21.1
GTEX-NL4W-0011-R11A-SM-2I3DW 21.0
GTEX-13OVH-0011-R11b-SM-5KM4X 20.7
GTEX-WVLH-0011-R11A-SM-3MJFO 20.6
GTEX-12ZZX-0011-R11a-SM-5DUVJ 20.5
GTEX-144GL-0011-R11b-SM-5P9F6 20.3
GTEX-12WSI-0011-R11b-SM-5P9EZ 20.1
GTEX-13NZA-0011-R11b-SM-5KM4W 20.0
GTEX-11ZUS-0011-R11b-SM-5BC7B 19.9
GTEX-13OW7-0011-R11a-SM-5O9DY 19.6
GTEX-1399T-0011-R11a-SM-5J2O1 19.5
GTEX-T5JC-0011-R11A-SM-32PMB 19.4
GTEX-ZUA1-0011-R11b-SM-51MTI 19.4
GTEX-WWYW-0011-R11A-SM-3NB38 19.1
GTEX-13QIC-0011-R11b-SM-5O9BU 19.0
GTEX-X4EP-0011-R11B-SM-4QASK 19.0
GTEX-13X6K-0011-R11a-SM-5P9F5 18.9
GTEX-139TT-0011-R11b-SM-5LZV1 18.8
GTEX-13X6I-0011-R11a-SM-5P9HN 18.8
GTEX-Q2AG-0011-R11A-SM-2HMKZ 18.8
GTEX-13JVG-0011-R11a-SM-5KM53 18.7
GTEX-14BIN-0011-R11a-SM-5SI79 18.6
GTEX-ZVZQ-0011-R11a-SM-51MS6 18.6
GTEX-13OVL-0011-R11b-SM-5L3G7 18.4
GTEX-S7SE-0011-R11A-SM-2XCDD 18.4
GTEX-XMD1-0011-R11A-SM-4AT5J 17.5
GTEX-13O3Q-0011-R11b-SM-5KM2W 17.4
GTEX-145LU-0011-R11b-SM-5P9JX 17.4
GTEX-11WQC-0011-R11b-SM-57WD6 17.3
GTEX-XOTO-0011-R11B-SM-4B64O 17.1
GTEX-13VXU-0011-R11b-SM-5O9DJ 17.0
GTEX-12WSF-0011-R11a-SM-5LZVT 16.6
GTEX-13FTY-0011-R11a-SM-5IJEA 16.6
GTEX-13G51-0011-R11b-SM-5J2NE 16.6
GTEX-14ABY-0011-R11a-SM-5SI7C 16.5
GTEX-1313W-0011-R11a-SM-5DUXN 16.3
GTEX-RVPV-0011-R11A-SM-2TF6F 16.2
GTEX-131XH-0011-R11a-SM-5EGLN 16.1
GTEX-13OW6-0011-R11a-SM-5L3H2 16.0
GTEX-ZE7O-0011-R11a-SM-57WBC 15.8
GTEX-13RTJ-0011-R11a-SM-5O9CK 15.7
GTEX-WZTO-0011-R11A-SM-4E3K9 15.7
GTEX-13SLW-0011-R11a-SM-5SI8Q 15.6
GTEX-12WSC-0011-R11a-SM-5GU5J 15.5
GTEX-13OW8-0011-R11a-SM-5L3GT 15.4
GTEX-N7MS-0011-R11A-SM-2HMJS 15.4
GTEX-ZAB4-0011-R11a-SM-4SOKI 15.4
GTEX-13FHO-0011-R11b-SM-5LZYQ 15.3
GTEX-13SLX-0011-R11b-SM-5O9C8 14.8
GTEX-13PVQ-0011-R11a-SM-5O9DU 14.7
GTEX-131YS-0011-R11b-SM-5EGLM 14.5
GTEX-13X6J-0011-R11a-SM-5P9HE 14.5
GTEX-12WSB-0011-R11b-SM-57WBJ 14.1
GTEX-NPJ7-0011-R11A-SM-2I3E8 13.8
GTEX-ZVT3-0011-R11b-SM-57WBI 13.7
GTEX-QDT8-0011-R11A-SM-32PKD 13.6
GTEX-R55E-0011-R11A-SM-2TC6I 13.5
GTEX-132Q8-0011-R11b-SM-5DUW9 13.4
GTEX-P44H-0011-R11A-SM-2XCER 13.3
GTEX-T6MN-0011-R11A-SM-32QOX 13.3
GTEX-13JUV-0011-R11a-SM-5LZYH 12.7
GTEX-Y8DK-0011-R11A-SM-4SOK2 12.7
GTEX-13PLJ-0011-R11b-SM-5O9BS 12.4
GTEX-ZF28-0011-R11a-SM-4WWEI 12.3
GTEX-145MH-0011-R11a-SM-5P9HQ 11.7
GTEX-13CZV-0011-R11b-SM-5N9FN 11.6
GTEX-OHPN-0011-R11A-SM-2I5FM 11.3
GTEX-12126-0011-R11a-SM-5BC6X 11.1
GTEX-13FLV-0011-R11a-SM-5LZZ7 11.1
GTEX-13OVJ-0011-R11a-SM-5P9H8 11.0
GTEX-WL46-0011-R11A-SM-3MJFT 11.0
GTEX-13FHP-0011-R11b-SM-5LZXP 10.7
GTEX-12WSE-0011-R11b-SM-5P9JW 10.5
GTEX-145MI-0011-R11a-SM-5P9JZ 9.7
GTEX-WHSE-0011-R11A-SM-3P5YY 9.3
GTEX-131XW-0011-R11a-SM-5DUV9 5.4
GTEX-139UW-0011-R11a-SM-5IJGN 4.6
Show all
 

Brain - Cerebellum

Brain - Cerebellum
RPKM: 17.5
Samples: 125

Max RPKM: 31
Min RPKM: 7.4
Std RPKM: 4.3
Median RPKM: 17.2
GTEX-X4XX-2926-SM-3NMB1 31.0
GTEX-12WSH-3126-SM-5LZW8 29.3
GTEX-11GSO-3026-SM-5Q5AL 27.6
GTEX-1399T-3126-SM-5IJFS 27.4
GTEX-11DZ1-2926-SM-5A5KI 26.9
GTEX-13OW5-3126-SM-5MR3Y 26.6
GTEX-145LS-3026-SM-5O99S 25.9
GTEX-UTHO-2926-SM-3P5Z9 25.8
GTEX-Z93S-2826-SM-57WBL 25.8
GTEX-YJ89-2926-SM-5P9IT 25.0
GTEX-13112-2926-SM-5DUWT 24.3
GTEX-11O72-2826-SM-5HL6W 23.8
GTEX-ZAJG-3026-SM-5HL92 23.7
GTEX-14ASI-2926-SM-5Q5DG 23.5
GTEX-QVJO-1325-SM-2S1QX 23.3
GTEX-117XS-3126-SM-5GIDP 22.9
GTEX-13OVH-2926-SM-5IJFH 22.5
GTEX-X261-3126-SM-4PQZC 22.5
GTEX-12ZZZ-3126-SM-5LZU6 22.3
GTEX-11ZVC-3026-SM-59HJM 21.9
GTEX-ZZPT-2926-SM-5EQ5S 21.7
GTEX-14C5O-2926-SM-5RQI1 21.1
GTEX-RNOR-2226-SM-2TF5O 20.6
GTEX-145LU-2626-SM-5LU9Z 20.4
GTEX-13X6K-2826-SM-5O9DS 20.2
GTEX-ZAK1-2926-SM-5HL9S 20.2
GTEX-TSE9-2926-SM-3DB77 20.1
GTEX-11TTK-2826-SM-5GU5K 20.0
GTEX-13N2G-3126-SM-5IJGL 20.0
GTEX-N7MS-2526-SM-2D7W3 19.9
GTEX-13X6I-2926-SM-5Q5C3 19.6
GTEX-12WSM-2126-SM-5GCOC 19.5
GTEX-14BIM-3126-SM-5Q5C7 19.5
GTEX-14E7W-2926-SM-5S2R8 19.3
GTEX-T2IS-2926-SM-32QPO 19.3
GTEX-139TT-2626-SM-5LZUB 19.2
GTEX-13JUV-3026-SM-5K7WX 19.2
GTEX-WWYW-3026-SM-3NB36 19.2
GTEX-PVOW-2626-SM-32PL8 18.9
GTEX-NPJ8-2626-SM-2D7W2 18.8
GTEX-11DXW-1026-SM-5H11K 18.5
GTEX-13QIC-3026-SM-5LU58 18.4
GTEX-11DXY-3126-SM-5N9BT 18.3
GTEX-1313W-3026-SM-5LZUZ 18.3
GTEX-XMD1-2826-SM-4AT5F 18.2
GTEX-1128S-2826-SM-5N9DI 18.1
GTEX-11ZUS-2826-SM-5EQKW 18.1
GTEX-14DAQ-3026-SM-5S2QZ 18.1
GTEX-T5JC-2326-SM-32PMR 18.0
GTEX-ZAB4-2926-SM-57WCV 18.0
GTEX-11ONC-3026-SM-5985W 17.7
GTEX-12WSB-3026-SM-59HKM 17.6
GTEX-144GL-2926-SM-5O99F 17.6
GTEX-RU72-2926-SM-2TF66 17.6
GTEX-ZYY3-3026-SM-5GIEJ 17.6
GTEX-XLM4-2926-SM-4AT59 17.5
GTEX-11EMC-3326-SM-5P9JH 17.4
GTEX-13VXU-3026-SM-5LU3K 17.4
GTEX-PWO3-1026-SM-2I5F2 17.3
GTEX-12ZZX-2826-SM-5BC6K 17.2
GTEX-N7MT-1226-SM-2D7W4 17.2
GTEX-R55F-1226-SM-2TF59 17.2
GTEX-X4EP-3026-SM-3P5YP 17.2
GTEX-11GSP-3126-SM-5A5LL 17.1
GTEX-13G51-3126-SM-5IJG7 17.0
GTEX-13OVL-3026-SM-5IJF1 17.0
GTEX-111FC-3326-SM-5GZYV 16.8
GTEX-14BIN-3326-SM-5Q5E6 16.8
GTEX-13RTJ-3126-SM-5S2Q4 16.6
GTEX-T6MN-2526-SM-32PMN 16.6
GTEX-YFC4-3026-SM-5IFJK 16.5
GTEX-QMR6-1326-SM-32PLB 16.3
GTEX-WVLH-2926-SM-3MJG5 16.3
GTEX-1192X-3226-SM-5987D 16.2
GTEX-12WSC-2926-SM-5BC5Z 16.2
GTEX-13OW8-2926-SM-5L3FV 16.1
GTEX-NPJ7-2826-SM-2I3FU 16.1
GTEX-QVUS-2926-SM-3GIJB 16.1
GTEX-131YS-3026-SM-5EGHY 15.9
GTEX-13OW6-2926-SM-5KM29 15.9
GTEX-145MH-2926-SM-5Q5D2 15.9
GTEX-13S7M-3026-SM-5S2QQ 15.8
GTEX-13FXS-3026-SM-5LZYO 15.6
GTEX-13FHO-2926-SM-5L3ES 15.5
GTEX-13O3O-3026-SM-5KM42 15.5
GTEX-12ZZY-2926-SM-5DUXO 15.3
GTEX-QDT8-3026-SM-32PKB 15.3
GTEX-147F4-3026-SM-5Q5BJ 15.2
GTEX-ZVT3-2926-SM-5GU6M 15.2
GTEX-131XH-2926-SM-5LZU4 15.1
GTEX-13NYB-3226-SM-5J2ND 15.1
GTEX-12WSD-3026-SM-5LZU7 15.0
GTEX-ZYFD-2926-SM-5GID9 15.0
GTEX-139TS-3126-SM-5LZWX 14.9
GTEX-WZTO-2826-SM-3NM8P 14.9
GTEX-14A5I-2826-SM-5SIBF 14.8
GTEX-S7SE-2526-SM-2XCDL 14.8
GTEX-XOTO-2926-SM-4B65G 14.6
GTEX-Y111-2826-SM-4TT3O 14.6
GTEX-ZUA1-2926-SM-59HL3 14.6
GTEX-11DYG-2926-SM-5H132 14.4
GTEX-13O3Q-3026-SM-5IJGD 14.4
GTEX-R55E-2526-SM-2TC6H 14.0
GTEX-11ZTS-3226-SM-5EGID 13.8
GTEX-Q2AG-2826-SM-2HMJQ 13.8
GTEX-Y8DK-0726-SM-4TT3S 13.7
GTEX-11NUK-3026-SM-5986K 13.6
GTEX-13CF2-3026-SM-5IFFX 13.1
GTEX-12WSE-2926-SM-5RQJ9 12.8
GTEX-13OW7-2926-SM-5MR3Z 12.4
GTEX-WL46-2826-SM-3LK81 12.3
GTEX-11OF3-3126-SM-5GU5E 12.2
GTEX-13PVQ-2926-SM-5L3HJ 12.1
GTEX-P44H-2426-SM-2XCEJ 12.1
GTEX-132Q8-2926-SM-5IFFP 11.9
GTEX-13JVG-3226-SM-5IJGJ 11.9
GTEX-11EI6-2926-SM-5985U 11.7
GTEX-WHSE-2926-SM-3NMBG 11.3
GTEX-11NV4-2226-SM-5BC4T 11.1
GTEX-12126-0926-SM-5FQTW 11.1
GTEX-13FHP-2926-SM-5IJG9 10.9
GTEX-11PRG-2826-SM-5BC54 10.8
GTEX-145MG-3126-SM-5Q5D3 10.5
GTEX-1269C-3126-SM-5EGI6 10.2
GTEX-13OVJ-2726-SM-5IJG6 7.4
Show all

CEREBELLUM - FANTOM5 CAGEi

Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.

Read more

Average Tags Per Million

11.4

FANTOM5 sample id

Sample description

Tags Per Million

Cerebellum
Tags Per Million: 11.4
FF:10166-103B4 76 years, female 16.6
FF:10083-102B2 22-68 years, mixed 6.2

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