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ARHGEF40

COLON - Expression summary

RNA expression
HPA:8.4TPM
GTEx:13.2RPKM
FANTOM5:16.9Tags Per Million

COLON - Annotated protein expression
 

Antibody staining

Antibody HPA030746

  

Antibody HPA030757

  

Endothelial cells

 Not detected   Not detected  

Glandular cells

 Low   Low  

Peripheral nerve/ganglion

 Low   High  
   
   
   

COLON - HPA RNA-seq

Average TPM

8.4
overview Male, age 54
Sample 1
TPM: 5.4
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57
Sample 2
TPM: 5.5
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80
Sample 3
TPM: 4.7
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68
Sample 4
TPM: 5.4
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68
Sample 5
TPM: 2.6
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61
Sample 6
TPM: 9.8
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80
Sample 7
TPM: 9.7
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78
Sample 8
TPM: 9.8
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84
Sample 9
TPM: 10.1
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80
Sample 10
TPM: 9.2
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78
Sample 11
TPM: 14.9
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69
Sample 12
TPM: 12.7
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72
Sample 13
TPM: 9.5
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

13.2

GTEx sample id

RPKM
 

Colon - Sigmoid
Colon - Sigmoid
RPKM: 11.2
Samples: 149

Max RPKM: 20.7
Min RPKM: 3.5
Std RPKM: 3.5
Median RPKM: 10.7
GTEX-ZVT3-2826-SM-5GU6A 20.7
GTEX-139D8-2926-SM-5IJBM 20.5
GTEX-11DXY-2026-SM-5N9CZ 20.0
GTEX-147GR-2826-SM-5RQK8 19.9
GTEX-132NY-2726-SM-5PNY2 19.5
GTEX-147JS-2626-SM-5S2UX 19.5
GTEX-13SLW-2826-SM-5Q5ES 18.9
GTEX-11PRG-2026-SM-5GU5F 18.8
Show all
 

Colon - Transverse
Colon - Transverse
RPKM: 14.8
Samples: 196

Max RPKM: 26.5
Min RPKM: 5
Std RPKM: 4.8
Median RPKM: 14.5
GTEX-UJMC-1326-SM-4IHLS 26.5
GTEX-139TS-1926-SM-5IJFO 26.3
GTEX-RM2N-0926-SM-48FD1 25.6
GTEX-U3ZN-2126-SM-4DXU1 25.6
GTEX-WFG7-1526-SM-4LVMG 24.6
GTEX-XMK1-1726-SM-4B64Z 24.3
GTEX-X15G-1326-SM-4PQZJ 24.1
GTEX-14DAR-1526-SM-5RQIX 23.5
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

16.9

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 16.9
FF:10014-101C5 62,83,84 years, mixed 16.9

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.