We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
Fields »
 

Field

Term
Gene name

Class

Subclass

Chromosome

External id

In atlas

Reliability

Reliability

Reliability

Validation

Method

Validation

Method

Validation

Method

Validation

Location

Searches

Tissue

Cell type

Expression

Tissue

Specificity

Cell line

Specificity

Tissue

Detectable

Cell line

Detectable

Category

Score

Score

Score

Antibodies

Column

 
 
ABOUT
HELP
BLOG
  • THE HUMAN PROTEOME
  • THE HUMAN TISSUES
  • THE HUMAN CELL
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
    • NEWS
    • BLOG
    • EVENTS
    • PRESS ROOM
    • LEARN
    • DICTIONARY
    • METHODS
    • CELL LINES
  • THE PROJECT
  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS
  • PUBLICATION DATA
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • LINKS
  • CONTACT
  • TECHNICAL DATA
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • DOWNLOADABLE DATA
  • HELP & FAQ
  • LICENCE & CITATION
  • PRIVACY STATEMENT
  • RELEASE HISTORY
SPINT2
  • TISSUE

  • CELL

  • CANCER

TISSUE ATLAS PRIMARY DATA CAUDATE

GENE/PROTEIN

Antibody validation


Dictionary

Caudate

CAUDATE - Expression summary

Protein expression

h
m
l
n

RNA expression

GTEx:16.7RPKM
FANTOM5:49.0Tags Per Million

CAUDATE - Annotated protein expression

Annotated protein
expression

Glial cells:Medium
Neuronal cells:Low
 

Antibody staining

Antibody HPA011101

 

Antibody CAB018969

 

Glial cells

Medium   Low  

Neuronal cells

Low   Medium  
   
   
   

CAUDATE - HPA RNA-seq

Pending HPA RNA-seq analysis


CAUDATE - GTEx RNA-seq

Average RPKM

16.7

GTEx sample id

RPKM

 

Brain - Caudate (basal ganglia)

Brain - Caudate (basal ganglia)
RPKM: 16.7
Samples: 117

Max RPKM: 32
Min RPKM: 3.3
Std RPKM: 6.6
Median RPKM: 17.1
GTEX-139TT-0011-R5b-SM-5K7W8 32.0
GTEX-X585-0011-R5A-SM-46MVI 30.9
GTEX-13X6K-0011-R5b-SM-5PNUE 30.7
GTEX-12WSC-0011-R5b-SM-5CVNS 30.0
GTEX-13G51-0011-R5a-SM-5L3EB 29.7
GTEX-ZUA1-0011-R5b-SM-51MTG 29.7
GTEX-132Q8-0011-R5a-SM-5IJDM 27.4
GTEX-1399T-0011-R5b-SM-5IJDK 27.2
GTEX-131YS-0011-R5b-SM-5K7YB 26.2
GTEX-13RTJ-0011-R5a-SM-5P9HR 26.1
GTEX-13O3Q-0011-R5b-SM-5P9H4 25.3
GTEX-ZAB4-0011-R5a-SM-4SOKC 25.3
GTEX-145LS-0011-R5a-SM-5SI65 24.5
GTEX-N7MT-0011-R5a-SM-2I3G6 24.5
GTEX-12ZZY-0011-R5a-SM-5EGL9 23.9
GTEX-1313W-0011-R5b-SM-5L3EP 23.6
GTEX-145MH-0011-R5a-SM-5P9JT 23.3
GTEX-WZTO-0011-R5B-SM-3NMC5 23.3
GTEX-T6MN-0011-R5A-SM-32QPD 23.2
GTEX-13N1W-0011-R5b-SM-5MR5Q 23.1
GTEX-11H98-0011-R5b-SM-57WCF 22.9
GTEX-14BIM-0011-R5b-SM-5S2RM 22.9
GTEX-13X6J-0011-R5b-SM-5PNWT 22.8
GTEX-13VXU-0011-R5a-SM-5O9D7 22.7
GTEX-TSE9-0011-R5A-SM-3DB7J 22.0
GTEX-13OW6-0011-R5a-SM-5O9BK 21.8
GTEX-13FXS-0011-R5b-SM-5LZYE 21.7
GTEX-13OW8-0011-R5b-SM-5L3FQ 21.7
GTEX-12WSM-0011-R5a-SM-5EQ4Y 21.5
GTEX-13SLX-0011-R5a-SM-5O9BV 21.4
GTEX-13NYB-0011-R5a-SM-5MR45 21.2
GTEX-WVLH-0011-R5A-SM-3MJFW 21.2
GTEX-11NV4-0011-R5a-SM-5NQ88 21.1
GTEX-T2IS-0011-R5A-SM-32QP4 21.1
GTEX-13OVL-0011-R5b-SM-5L3FU 20.9
GTEX-14ABY-0011-R5b-SM-5SI7B 20.4
GTEX-QVJO-0011-R5A-SM-2S1QM 20.4
GTEX-WHSE-0011-R5A-SM-3P5ZO 20.4
GTEX-13FHO-0011-R5b-SM-5LZZ3 20.3
GTEX-Q2AG-0011-R5A-SM-2HMJH 20.3
GTEX-11GSP-0011-R5a-SM-57WBE 19.2
GTEX-13O3O-0011-R5b-SM-5KM44 19.2
GTEX-11OF3-0011-R5a-SM-57WB4 19.1
GTEX-WL46-0011-R5A-SM-3LK6V 19.0
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 18.9
GTEX-13X6I-0011-R5a-SM-5PNWW 18.9
GTEX-Z93S-0011-R5b-SM-4RGNI 18.9
GTEX-P44H-0011-R5A-SM-2XCEX 18.8
GTEX-UTHO-0011-R5A-SM-3GIJD 18.6
GTEX-12WSB-0011-R5b-SM-5GU67 18.5
GTEX-N7MS-0011-R5a-SM-2HMK8 18.4
GTEX-T5JC-0011-R5A-SM-32PLK 18.3
GTEX-13CZV-0011-R5a-SM-5K7XA 18.1
GTEX-13FLW-0011-R5a-SM-5LZX6 17.9
GTEX-13S7M-0011-R5b-SM-5P9HS 17.7
GTEX-12ZZX-0011-R5a-SM-5HL89 17.3
GTEX-RU72-0011-R5A-SM-2TF6U 17.3
GTEX-13JUV-0011-R5a-SM-5LZY5 17.1
GTEX-S7SE-0011-R5A-SM-2XCDA 17.1
GTEX-12WSF-0011-R5a-SM-5HL8K 16.8
GTEX-WWYW-0011-R5A-SM-3NB3E 16.8
GTEX-OHPN-0011-R5A-SM-2I5FF 16.7
GTEX-13NYS-0011-R5a-SM-5MR4D 16.5
GTEX-RVPV-0011-R5A-SM-2TF69 16.5
GTEX-ZE9C-0011-R5a-SM-5EGLO 16.5
GTEX-Y8DK-0011-R5B-SM-4RTW6 16.3
GTEX-12WSD-0011-R5b-SM-5CVNG 16.1
GTEX-13FLV-0011-R5a-SM-5LZWT 15.6
GTEX-13OW7-0011-R5b-SM-5O9DM 15.5
GTEX-QMR6-0011-R5A-SM-32PKT 15.5
GTEX-R55E-0011-R5A-SM-2TC5N 15.5
GTEX-13OW5-0011-R5b-SM-5L3FR 15.2
GTEX-13OVH-0011-R5b-SM-5KM4L 14.9
GTEX-XOTO-0011-R5A-SM-4B657 14.7
GTEX-13SLW-0011-R5b-SM-5SI6Z 14.3
GTEX-PVOW-0011-R5A-SM-32PL7 14.0
GTEX-XMD1-0011-R5A-SM-4AT47 14.0
GTEX-12WSA-0011-R5b-SM-5GU5I 13.4
GTEX-13OVJ-0011-R5a-SM-5P9H7 12.8
GTEX-NL4W-0011-R5a-SM-2I3GD 12.7
GTEX-RVPU-0011-R5A-SM-2XCAD 12.6
GTEX-14BIN-0011-R5b-SM-5SI78 12.4
GTEX-ZE7O-0011-R5a-SM-57WBO 12.0
GTEX-NPJ8-0011-R5a-SM-2HMJY 11.9
GTEX-YFC4-0011-R5a-SM-4RGLR 11.9
GTEX-PWO3-0011-R5A-SM-2I5EZ 11.8
GTEX-12WSH-0011-R5b-SM-5P9F3 11.6
GTEX-13JVG-0011-R5a-SM-5MR4O 11.6
GTEX-ZXG5-0011-R5b-SM-57WBN 11.0
GTEX-144GO-0011-R5a-SM-5PNUR 10.6
GTEX-12ZZW-0011-R5a-SM-5DUVN 10.5
GTEX-13CIG-0011-R5b-SM-5L3F2 10.3
GTEX-NL3H-0011-R5a-SM-2I3GB 10.3
GTEX-ZF28-0011-R5a-SM-4WWCZ 10.3
GTEX-YJ89-0011-R5a-SM-4V6GM 10.1
GTEX-139TS-0011-R5b-SM-5J2MZ 9.6
GTEX-11WQC-0011-R5a-SM-5BC74 9.4
GTEX-ZVT3-0011-R5a-SM-51MSI 9.4
GTEX-X4XX-0011-R5A-SM-46MWN 9.0
GTEX-13112-0011-R5b-SM-5DUV8 8.3
GTEX-1477Z-0011-R5b-SM-5PNUO 8.1
GTEX-X261-0011-R5A-SM-3NMB4 8.1
GTEX-13PLJ-0011-R5a-SM-5O9BG 8.0
GTEX-13FHP-0011-R5b-SM-5LZY2 7.9
GTEX-OXRN-0011-R5A-SM-2I5EF 7.9
GTEX-13PVQ-0011-R5b-SM-5O9DI 7.6
GTEX-ZVZQ-0011-R5b-SM-57WDC 7.6
GTEX-NPJ7-0011-R5a-SM-33HBK 7.4
GTEX-139T8-0011-R5b-SM-5J1MO 6.9
GTEX-ZV68-0011-R5a-SM-4YCDW 6.8
GTEX-144GL-0011-R5b-SM-5PNUJ 6.6
GTEX-13CF2-0011-R5a-SM-5LZWS 6.1
GTEX-11UD1-0011-R5b-SM-5P9FP 6.0
GTEX-13NZA-0011-R5b-SM-5KM4K 5.4
GTEX-1445S-0011-R5a-SM-5PNUS 4.6
GTEX-S7PM-0011-R5A-SM-3NM8G 4.1
GTEX-145MG-0011-R5b-SM-5S2VU 3.3
Show all

CAUDATE - FANTOM5 CAGE

Average Tags Per Million

49.0

FANTOM5 sample id

Sample description

Tags Per Million

Caudate nucleus
Tags Per Million: 49.0
FF:10379-105H1 89 years, female 55.7
FF:10164-103B2 76 years, female 42.3

Contact

  • BLOG
  • PRESS ROOM
  • contact@proteinatlas.org

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS
  • DOWNLOADABLE DATA

The Human Protein Atlas

  • ANTIBODY AVAILABILITY
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.