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Field

Term
Gene name

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Chromosome

External id

In atlas

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Validation

Method

Validation

Method

Validation

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Cell type

Expression

Tissue

Specificity

Cell line

Specificity

Tissue

Detectable

Cell line

Detectable

Category

Score

Score

Score

Antibodies

Column

 
 
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TISSUE ATLAS PRIMARY DATA URINARY BLADDER

GENE/PROTEIN

Antibody validation


Dictionary

Urinary bladder

URINARY BLADDER - Expression summary

Protein expression

h
m
l
n

RNA expression

HPA:76.2TPM
GTEx:119.6RPKM
FANTOM5:325.4Tags Per Million

URINARY BLADDER - Annotated protein expression

Annotated protein
expression

Urothelial cells:Not detected
 

Antibody staining

Antibody HPA002188

 

Antibody CAB024961

 

Urothelial cells

High   Low  
   
   
   

URINARY BLADDER - HPA RNA-seq

Average TPM

76.2

overview Male, age 74
Sample 1
TPM: 75.9
Cell types%
Urothelial cells: 5
Smooth muscle cells: 60
Fibroblasts: 20
Endothelial cells: 10
Other cell types: 5
overview Male, age 80
Sample 2
TPM: 76.5
Cell types%
Urothelial cells: 10
Smooth muscle cells: 45
Fibroblasts: 15
Endothelial cells: 10
Other cell types: 20

URINARY BLADDER - GTEx RNA-seq

Average RPKM

119.6

GTEx sample id

RPKM

40.093.7151.26.7280.5050100150200250300350
 
40.093.7151.26.7280.5050100150200250300350

Bladder

Bladder
RPKM: 119.6
Samples: 11

Max RPKM: 350.8
Min RPKM: 6.7
Std RPKM: 104.8
Median RPKM: 93.7
GTEX-SNMC-0826-SM-4DM66 350.8
GTEX-S4Q7-0926-SM-4AD5D 280.5
GTEX-S3XE-1226-SM-4AD4L 185.7
GTEX-U3ZN-1226-SM-4DXUD 116.7
GTEX-S4UY-0926-SM-4AD6O 97.5
GTEX-S32W-1126-SM-4AD5V 93.7
GTEX-TMMY-1526-SM-4DXST 76.9
GTEX-U4B1-1226-SM-4DXT7 47.7
GTEX-SNOS-0526-SM-4DM54 32.4
GTEX-U3ZM-0826-SM-4DXU6 26.7
GTEX-SE5C-1026-SM-4BRUG 6.7
Show all

URINARY BLADDER - FANTOM5 CAGE

Average Tags Per Million

325.4

FANTOM5 sample id

Sample description

Tags Per Million

Bladder
Tags Per Million: 325.4
FF:10011-101C2 55,58,79 years, mixed 325.4

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