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COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:26.2TPM
GTEx:14.7RPKM
FANTOM5:59.6Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:High
Glandular cells:Not detected
Peripheral nerve/ganglion:Not detected
 

Antibody staining

Antibody HPA034631

  

Antibody CAB033265

  

Antibody CAB037325

  

Endothelial cells

 High   Low   High  

Glandular cells

 Medium   Medium   Not detected  

Peripheral nerve/ganglion

 Medium   Low   Not detected  
     
     
     

COLON - HPA RNA-seq

Average TPM

26.2
overview Male, age 54
Sample 1
TPM: 13.7
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57
Sample 2
TPM: 16.9
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80
Sample 3
TPM: 17.9
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68
Sample 4
TPM: 65.3
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68
Sample 5
TPM: 21.2
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61
Sample 6
TPM: 29.5
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80
Sample 7
TPM: 27.5
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78
Sample 8
TPM: 19.1
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84
Sample 9
TPM: 24.1
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80
Sample 10
TPM: 20.2
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78
Sample 11
TPM: 25.9
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69
Sample 12
TPM: 32.6
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72
Sample 13
TPM: 26.3
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

14.7

GTEx sample id

RPKM
 

Colon - Sigmoid
Colon - Sigmoid
RPKM: 15.1
Samples: 149

Max RPKM: 36.7
Min RPKM: 3.5
Std RPKM: 6.2
Median RPKM: 14.4
GTEX-YEC3-2026-SM-4WWFL 36.7
GTEX-WFON-1326-SM-4LVMN 31.0
GTEX-WI4N-2226-SM-4OOS9 30.3
GTEX-147GR-2826-SM-5RQK8 29.5
GTEX-11EMC-1426-SM-5N9E4 28.7
GTEX-145LS-2926-SM-5O99G 28.0
GTEX-131XG-1526-SM-5GCNQ 27.8
GTEX-YJ8A-1726-SM-5P9IQ 27.6
Show all
 

Colon - Transverse
Colon - Transverse
RPKM: 14.3
Samples: 196

Max RPKM: 43.5
Min RPKM: 6.3
Std RPKM: 5.6
Median RPKM: 12.9
GTEX-13W3W-2126-SM-5K7UX 43.5
GTEX-13OVG-1426-SM-5K7VP 41.8
GTEX-111VG-2226-SM-5N9DU 39.2
GTEX-11O72-2226-SM-5PNW2 34.1
GTEX-13OVI-2026-SM-5J1MU 30.3
GTEX-13O3O-2526-SM-5L3DR 29.4
GTEX-ZYVF-2826-SM-5GIDK 26.4
GTEX-ZAB4-2226-SM-5HL97 25.6
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

59.6

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 59.6
FF:10014-101C5 62,83,84 years, mixed 59.6

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.