We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
Fields »
 

Field

Term
Gene name

Class

Subclass

Chromosome

External id

In atlas

Reliability

Reliability

Reliability

Validation

Method

Validation

Method

Validation

Method

Validation

Location

Searches

Tissue

Cell type

Expression

Tissue

Specificity

Cell line

Specificity

Tissue

Detectable

Cell line

Detectable

Category

Score

Score

Score

Antibodies

Column

 
 
ABOUT
HELP
BLOG
  • THE HUMAN PROTEOME
  • THE HUMAN TISSUES
  • THE HUMAN CELL
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
    • NEWS
    • BLOG
    • EVENTS
    • PRESS ROOM
    • LEARN
    • DICTIONARY
    • METHODS
    • CELL LINES
  • THE PROJECT
  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS
  • PUBLICATION DATA
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • LINKS
  • CONTACT
  • TECHNICAL DATA
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • DOWNLOADABLE DATA
  • HELP & FAQ
  • LICENCE & CITATION
  • PRIVACY STATEMENT
  • RELEASE HISTORY
SCRIB
  • premium

    TISSUE

  • premium

    CELL

  • CANCER

TISSUE ATLAS PRIMARY DATA CAUDATE

GENE/PROTEIN

Antibody validation


Dictionary

Caudate

CAUDATE - Expression summary

Protein expression

h
m
l
n

RNA expression

GTEx:11.6RPKM
FANTOM5:12.2Tags Per Million

CAUDATE - Annotated protein expression

Annotated protein
expression

Glial cells:Not detected
Neuronal cells:Not detected
 

Antibody staining

Antibody HPA023557

 

Antibody CAB015463

 

Antibody CAB022081

 

Glial cells

Low   Not detected   Low  

Neuronal cells

Low   Not detected   Low  
     
     
     

CAUDATE - HPA RNA-seq

Pending HPA RNA-seq analysis


CAUDATE - GTEx RNA-seq

Average RPKM

11.6

GTEx sample id

RPKM

 

Brain - Caudate (basal ganglia)

Brain - Caudate (basal ganglia)
RPKM: 11.6
Samples: 117

Max RPKM: 26.9
Min RPKM: 2.8
Std RPKM: 3.1
Median RPKM: 11.4
GTEX-X4XX-0011-R5A-SM-46MWN 26.9
GTEX-13OVJ-0011-R5a-SM-5P9H7 20.1
GTEX-13JVG-0011-R5a-SM-5MR4O 18.7
GTEX-13NYB-0011-R5a-SM-5MR45 16.7
GTEX-13FHO-0011-R5b-SM-5LZZ3 16.6
GTEX-13FLW-0011-R5a-SM-5LZX6 16.2
GTEX-13NYS-0011-R5a-SM-5MR4D 15.8
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 15.7
GTEX-13OW8-0011-R5b-SM-5L3FQ 15.6
GTEX-WL46-0011-R5A-SM-3LK6V 15.6
GTEX-XMD1-0011-R5A-SM-4AT47 15.6
GTEX-X585-0011-R5A-SM-46MVI 15.5
GTEX-13OW6-0011-R5a-SM-5O9BK 15.4
GTEX-13FLV-0011-R5a-SM-5LZWT 15.3
GTEX-13JUV-0011-R5a-SM-5LZY5 15.3
GTEX-11GSP-0011-R5a-SM-57WBE 14.8
GTEX-RVPV-0011-R5A-SM-2TF69 14.7
GTEX-ZF28-0011-R5a-SM-4WWCZ 14.5
GTEX-13FXS-0011-R5b-SM-5LZYE 14.4
GTEX-X261-0011-R5A-SM-3NMB4 14.4
GTEX-13SLW-0011-R5b-SM-5SI6Z 14.1
GTEX-12ZZY-0011-R5a-SM-5EGL9 14.0
GTEX-NPJ8-0011-R5a-SM-2HMJY 14.0
GTEX-Y8DK-0011-R5B-SM-4RTW6 13.8
GTEX-13X6I-0011-R5a-SM-5PNWW 13.7
GTEX-R55E-0011-R5A-SM-2TC5N 13.5
GTEX-13OW5-0011-R5b-SM-5L3FR 13.4
GTEX-13RTJ-0011-R5a-SM-5P9HR 13.3
GTEX-ZE7O-0011-R5a-SM-57WBO 13.3
GTEX-139TS-0011-R5b-SM-5J2MZ 13.2
GTEX-13X6K-0011-R5b-SM-5PNUE 13.2
GTEX-12WSB-0011-R5b-SM-5GU67 13.1
GTEX-NL4W-0011-R5a-SM-2I3GD 13.1
GTEX-12ZZW-0011-R5a-SM-5DUVN 13.0
GTEX-13OVH-0011-R5b-SM-5KM4L 13.0
GTEX-144GO-0011-R5a-SM-5PNUR 12.9
GTEX-XOTO-0011-R5A-SM-4B657 12.9
GTEX-RU72-0011-R5A-SM-2TF6U 12.7
GTEX-WWYW-0011-R5A-SM-3NB3E 12.7
GTEX-13G51-0011-R5a-SM-5L3EB 12.5
GTEX-WZTO-0011-R5B-SM-3NMC5 12.5
GTEX-13N1W-0011-R5b-SM-5MR5Q 12.4
GTEX-ZE9C-0011-R5a-SM-5EGLO 12.4
GTEX-12ZZX-0011-R5a-SM-5HL89 12.2
GTEX-13SLX-0011-R5a-SM-5O9BV 12.0
GTEX-Q2AG-0011-R5A-SM-2HMJH 12.0
GTEX-ZXG5-0011-R5b-SM-57WBN 12.0
GTEX-ZAB4-0011-R5a-SM-4SOKC 11.9
GTEX-ZV68-0011-R5a-SM-4YCDW 11.9
GTEX-12WSA-0011-R5b-SM-5GU5I 11.8
GTEX-NL3H-0011-R5a-SM-2I3GB 11.8
GTEX-ZVZQ-0011-R5b-SM-57WDC 11.8
GTEX-145LS-0011-R5a-SM-5SI65 11.7
GTEX-14BIM-0011-R5b-SM-5S2RM 11.7
GTEX-1399T-0011-R5b-SM-5IJDK 11.6
GTEX-139T8-0011-R5b-SM-5J1MO 11.6
GTEX-N7MS-0011-R5a-SM-2HMK8 11.5
GTEX-12WSD-0011-R5b-SM-5CVNG 11.4
GTEX-13FHP-0011-R5b-SM-5LZY2 11.4
GTEX-13O3Q-0011-R5b-SM-5P9H4 11.4
GTEX-11WQC-0011-R5a-SM-5BC74 11.3
GTEX-132Q8-0011-R5a-SM-5IJDM 11.1
GTEX-139TT-0011-R5b-SM-5K7W8 11.1
GTEX-13OW7-0011-R5b-SM-5O9DM 11.0
GTEX-145MH-0011-R5a-SM-5P9JT 11.0
GTEX-1445S-0011-R5a-SM-5PNUS 10.9
GTEX-13OVL-0011-R5b-SM-5L3FU 10.7
GTEX-N7MT-0011-R5a-SM-2I3G6 10.7
GTEX-WVLH-0011-R5A-SM-3MJFW 10.7
GTEX-11UD1-0011-R5b-SM-5P9FP 10.6
GTEX-OHPN-0011-R5A-SM-2I5FF 10.6
GTEX-13PLJ-0011-R5a-SM-5O9BG 10.5
GTEX-11H98-0011-R5b-SM-57WCF 10.4
GTEX-YFC4-0011-R5a-SM-4RGLR 10.4
GTEX-13PVQ-0011-R5b-SM-5O9DI 10.3
GTEX-YJ89-0011-R5a-SM-4V6GM 10.3
GTEX-11OF3-0011-R5a-SM-57WB4 10.2
GTEX-13VXU-0011-R5a-SM-5O9D7 10.2
GTEX-ZUA1-0011-R5b-SM-51MTG 10.2
GTEX-11NV4-0011-R5a-SM-5NQ88 10.1
GTEX-12WSF-0011-R5a-SM-5HL8K 10.1
GTEX-12WSH-0011-R5b-SM-5P9F3 10.1
GTEX-131YS-0011-R5b-SM-5K7YB 10.1
GTEX-T5JC-0011-R5A-SM-32PLK 10.0
GTEX-Z93S-0011-R5b-SM-4RGNI 10.0
GTEX-12WSC-0011-R5b-SM-5CVNS 9.8
GTEX-13S7M-0011-R5b-SM-5P9HS 9.8
GTEX-14ABY-0011-R5b-SM-5SI7B 9.8
GTEX-14BIN-0011-R5b-SM-5SI78 9.8
GTEX-T6MN-0011-R5A-SM-32QPD 9.7
GTEX-ZVT3-0011-R5a-SM-51MSI 9.5
GTEX-144GL-0011-R5b-SM-5PNUJ 9.3
GTEX-13CZV-0011-R5a-SM-5K7XA 9.1
GTEX-S7SE-0011-R5A-SM-2XCDA 9.1
GTEX-13112-0011-R5b-SM-5DUV8 9.0
GTEX-13CIG-0011-R5b-SM-5L3F2 9.0
GTEX-QVJO-0011-R5A-SM-2S1QM 9.0
GTEX-1313W-0011-R5b-SM-5L3EP 8.8
GTEX-13CF2-0011-R5a-SM-5LZWS 8.8
GTEX-UTHO-0011-R5A-SM-3GIJD 8.8
GTEX-1477Z-0011-R5b-SM-5PNUO 8.7
GTEX-TSE9-0011-R5A-SM-3DB7J 8.7
GTEX-NPJ7-0011-R5a-SM-33HBK 8.6
GTEX-13X6J-0011-R5b-SM-5PNWT 8.5
GTEX-13O3O-0011-R5b-SM-5KM44 8.3
GTEX-145MG-0011-R5b-SM-5S2VU 8.3
GTEX-QMR6-0011-R5A-SM-32PKT 8.3
GTEX-RVPU-0011-R5A-SM-2XCAD 8.2
GTEX-WHSE-0011-R5A-SM-3P5ZO 7.9
GTEX-12WSM-0011-R5a-SM-5EQ4Y 7.8
GTEX-PWO3-0011-R5A-SM-2I5EZ 7.8
GTEX-S7PM-0011-R5A-SM-3NM8G 7.4
GTEX-PVOW-0011-R5A-SM-32PL7 7.2
GTEX-OXRN-0011-R5A-SM-2I5EF 6.4
GTEX-13NZA-0011-R5b-SM-5KM4K 6.1
GTEX-P44H-0011-R5A-SM-2XCEX 5.6
GTEX-T2IS-0011-R5A-SM-32QP4 2.8
Show all

CAUDATE - FANTOM5 CAGE

Average Tags Per Million

12.2

FANTOM5 sample id

Sample description

Tags Per Million

Caudate nucleus
Tags Per Million: 12.2
FF:10164-103B2 76 years, female 15.3
FF:10379-105H1 89 years, female 9.1

Contact

  • BLOG
  • PRESS ROOM
  • contact@proteinatlas.org

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS
  • DOWNLOADABLE DATA

The Human Protein Atlas

  • ANTIBODY AVAILABILITY
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.