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COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:40.2TPM
GTEx:33.8RPKM
FANTOM5:36.8Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Not detected
Glandular cells:Medium
Peripheral nerve/ganglion:Low
 

Antibody staining

Antibody HPA004872

  

Antibody HPA007728

  

Endothelial cells

 Not detected   Low  

Glandular cells

 Medium   Medium  

Peripheral nerve/ganglion

 Medium  
   
   
   

COLON - HPA RNA-seq

Average TPM

40.2
overview Male, age 54
Sample 1
TPM: 35.1
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57
Sample 2
TPM: 51.5
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80
Sample 3
TPM: 53.4
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68
Sample 4
TPM: 38.3
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68
Sample 5
TPM: 37.2
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61
Sample 6
TPM: 39.6
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80
Sample 7
TPM: 39.4
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78
Sample 8
TPM: 45.9
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84
Sample 9
TPM: 37.7
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80
Sample 10
TPM: 26.0
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78
Sample 11
TPM: 37.4
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69
Sample 12
TPM: 30.7
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72
Sample 13
TPM: 50.7
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

33.8

GTEx sample id

RPKM
 

Colon - Sigmoid
Colon - Sigmoid
RPKM: 31.0
Samples: 149

Max RPKM: 58.8
Min RPKM: 19.4
Std RPKM: 5.9
Median RPKM: 30.2
GTEX-13O1R-2426-SM-5KLZZ 58.8
GTEX-14E6C-2226-SM-5QGQG 51.5
GTEX-V955-1726-SM-4JBHF 43.9
GTEX-13OVJ-1826-SM-5KM2D 41.8
GTEX-13PL7-2426-SM-5J2N3 41.8
GTEX-11TT1-0926-SM-5GU5M 41.6
GTEX-139D8-2926-SM-5IJBM 41.5
GTEX-ZAJG-2626-SM-5S2NU 40.3
Show all
 

Colon - Transverse
Colon - Transverse
RPKM: 36.0
Samples: 196

Max RPKM: 52.7
Min RPKM: 22.3
Std RPKM: 6.1
Median RPKM: 36.5
GTEX-PWCY-1026-SM-48TD4 52.7
GTEX-UJMC-1326-SM-4IHLS 52.2
GTEX-13OVJ-1726-SM-5IJDZ 51.8
GTEX-PLZ5-1126-SM-3P613 49.5
GTEX-11TT1-1026-SM-5PNW7 48.7
GTEX-OXRK-1726-SM-3NB16 47.0
GTEX-U3ZN-2126-SM-4DXU1 46.4
GTEX-1399R-2226-SM-5P9JB 46.1
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

36.8

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 36.8
FF:10014-101C5 62,83,84 years, mixed 36.8

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.