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BCAP31
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TISSUE ATLAS PRIMARY DATA CAUDATE
MOUSE BRAIN

GENE/PROTEIN

Antibody validation


Dictionary

Caudate

CAUDATE - Expression summary

Protein expression

h
m
l
n

RNA expression

GTEx:53.5RPKM
FANTOM5:48.3Tags Per Million

CAUDATE - Annotated protein expression

Annotated protein
expression

Glial cells:Low
Neuronal cells:Medium
 

Antibody staining

Antibody HPA003906

 

Antibody CAB015350

 

Antibody CAB015424

 

Glial cells

Medium   Low   Not detected  

Neuronal cells

Medium   Medium   Low  
     
     
     

CAUDATE - HPA RNA-seq

Pending HPA RNA-seq analysis


CAUDATE - GTEx RNA-seq

Average RPKM

53.5

GTEx sample id

RPKM

 

Brain - Caudate (basal ganglia)

Brain - Caudate (basal ganglia)
RPKM: 53.5
Samples: 117

Max RPKM: 85.5
Min RPKM: 21.6
Std RPKM: 13.2
Median RPKM: 55.2
GTEX-13RTJ-0011-R5a-SM-5P9HR 85.5
GTEX-X585-0011-R5A-SM-46MVI 80.9
GTEX-TSE9-0011-R5A-SM-3DB7J 78.4
GTEX-13X6K-0011-R5b-SM-5PNUE 75.8
GTEX-139TT-0011-R5b-SM-5K7W8 75.7
GTEX-11H98-0011-R5b-SM-57WCF 75.5
GTEX-132Q8-0011-R5a-SM-5IJDM 74.8
GTEX-13O3Q-0011-R5b-SM-5P9H4 74.4
GTEX-ZUA1-0011-R5b-SM-51MTG 74.2
GTEX-Q2AG-0011-R5A-SM-2HMJH 71.6
GTEX-13OVJ-0011-R5a-SM-5P9H7 70.7
GTEX-N7MT-0011-R5a-SM-2I3G6 70.7
GTEX-13G51-0011-R5a-SM-5L3EB 69.7
GTEX-12WSC-0011-R5b-SM-5CVNS 69.6
GTEX-13N1W-0011-R5b-SM-5MR5Q 69.0
GTEX-139T8-0011-R5b-SM-5J1MO 67.9
GTEX-T6MN-0011-R5A-SM-32QPD 67.9
GTEX-13SLX-0011-R5a-SM-5O9BV 67.0
GTEX-1399T-0011-R5b-SM-5IJDK 66.4
GTEX-145MH-0011-R5a-SM-5P9JT 66.1
GTEX-RU72-0011-R5A-SM-2TF6U 66.0
GTEX-14BIM-0011-R5b-SM-5S2RM 65.7
GTEX-13JUV-0011-R5a-SM-5LZY5 65.3
GTEX-13NYB-0011-R5a-SM-5MR45 65.0
GTEX-13NYS-0011-R5a-SM-5MR4D 65.0
GTEX-13FHO-0011-R5b-SM-5LZZ3 63.3
GTEX-QVJO-0011-R5A-SM-2S1QM 63.0
GTEX-12ZZY-0011-R5a-SM-5EGL9 62.0
GTEX-11GSP-0011-R5a-SM-57WBE 61.8
GTEX-145LS-0011-R5a-SM-5SI65 61.8
GTEX-13CZV-0011-R5a-SM-5K7XA 61.6
GTEX-1313W-0011-R5b-SM-5L3EP 60.7
GTEX-13OVH-0011-R5b-SM-5KM4L 60.4
GTEX-ZAB4-0011-R5a-SM-4SOKC 60.1
GTEX-13OW8-0011-R5b-SM-5L3FQ 60.0
GTEX-13JVG-0011-R5a-SM-5MR4O 59.9
GTEX-12WSA-0011-R5b-SM-5GU5I 59.6
GTEX-N7MS-0011-R5a-SM-2HMK8 59.6
GTEX-131YS-0011-R5b-SM-5K7YB 59.1
GTEX-13FXS-0011-R5b-SM-5LZYE 59.1
GTEX-13X6I-0011-R5a-SM-5PNWW 59.1
GTEX-13SLW-0011-R5b-SM-5SI6Z 58.4
GTEX-S7SE-0011-R5A-SM-2XCDA 58.4
GTEX-12WSM-0011-R5a-SM-5EQ4Y 58.3
GTEX-13FLV-0011-R5a-SM-5LZWT 58.0
GTEX-WWYW-0011-R5A-SM-3NB3E 57.9
GTEX-11OF3-0011-R5a-SM-57WB4 57.7
GTEX-NPJ8-0011-R5a-SM-2HMJY 57.7
GTEX-UTHO-0011-R5A-SM-3GIJD 57.7
GTEX-WHSE-0011-R5A-SM-3P5ZO 57.5
GTEX-13OW5-0011-R5b-SM-5L3FR 57.3
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 57.2
GTEX-13VXU-0011-R5a-SM-5O9D7 57.2
GTEX-11NV4-0011-R5a-SM-5NQ88 57.0
GTEX-13X6J-0011-R5b-SM-5PNWT 56.4
GTEX-NL3H-0011-R5a-SM-2I3GB 56.3
GTEX-13O3O-0011-R5b-SM-5KM44 56.0
GTEX-13OW6-0011-R5a-SM-5O9BK 55.8
GTEX-OHPN-0011-R5A-SM-2I5FF 55.2
GTEX-NL4W-0011-R5a-SM-2I3GD 54.2
GTEX-R55E-0011-R5A-SM-2TC5N 53.8
GTEX-ZE9C-0011-R5a-SM-5EGLO 53.5
GTEX-12ZZW-0011-R5a-SM-5DUVN 52.9
GTEX-14ABY-0011-R5b-SM-5SI7B 52.9
GTEX-P44H-0011-R5A-SM-2XCEX 51.4
GTEX-13CIG-0011-R5b-SM-5L3F2 51.3
GTEX-13S7M-0011-R5b-SM-5P9HS 50.8
GTEX-Z93S-0011-R5b-SM-4RGNI 50.8
GTEX-Y8DK-0011-R5B-SM-4RTW6 50.5
GTEX-144GO-0011-R5a-SM-5PNUR 50.3
GTEX-XMD1-0011-R5A-SM-4AT47 50.3
GTEX-12WSB-0011-R5b-SM-5GU67 50.1
GTEX-T5JC-0011-R5A-SM-32PLK 50.1
GTEX-RVPV-0011-R5A-SM-2TF69 49.8
GTEX-12WSF-0011-R5a-SM-5HL8K 49.7
GTEX-WVLH-0011-R5A-SM-3MJFW 49.6
GTEX-WZTO-0011-R5B-SM-3NMC5 48.6
GTEX-13OVL-0011-R5b-SM-5L3FU 48.4
GTEX-13OW7-0011-R5b-SM-5O9DM 48.2
GTEX-X4XX-0011-R5A-SM-46MWN 47.5
GTEX-PWO3-0011-R5A-SM-2I5EZ 47.4
GTEX-WL46-0011-R5A-SM-3LK6V 47.3
GTEX-NPJ7-0011-R5a-SM-33HBK 46.8
GTEX-RVPU-0011-R5A-SM-2XCAD 46.6
GTEX-T2IS-0011-R5A-SM-32QP4 46.5
GTEX-12ZZX-0011-R5a-SM-5HL89 46.3
GTEX-XOTO-0011-R5A-SM-4B657 45.4
GTEX-QMR6-0011-R5A-SM-32PKT 45.1
GTEX-ZF28-0011-R5a-SM-4WWCZ 45.1
GTEX-12WSD-0011-R5b-SM-5CVNG 44.8
GTEX-X261-0011-R5A-SM-3NMB4 44.4
GTEX-13FLW-0011-R5a-SM-5LZX6 44.3
GTEX-ZXG5-0011-R5b-SM-57WBN 43.1
GTEX-ZE7O-0011-R5a-SM-57WBO 42.1
GTEX-YFC4-0011-R5a-SM-4RGLR 41.9
GTEX-1445S-0011-R5a-SM-5PNUS 41.6
GTEX-ZVZQ-0011-R5b-SM-57WDC 40.4
GTEX-PVOW-0011-R5A-SM-32PL7 39.3
GTEX-13PVQ-0011-R5b-SM-5O9DI 39.1
GTEX-14BIN-0011-R5b-SM-5SI78 38.9
GTEX-ZV68-0011-R5a-SM-4YCDW 38.6
GTEX-OXRN-0011-R5A-SM-2I5EF 37.2
GTEX-13PLJ-0011-R5a-SM-5O9BG 36.9
GTEX-12WSH-0011-R5b-SM-5P9F3 34.1
GTEX-ZVT3-0011-R5a-SM-51MSI 34.1
GTEX-11WQC-0011-R5a-SM-5BC74 33.9
GTEX-144GL-0011-R5b-SM-5PNUJ 33.2
GTEX-YJ89-0011-R5a-SM-4V6GM 33.2
GTEX-11UD1-0011-R5b-SM-5P9FP 32.7
GTEX-139TS-0011-R5b-SM-5J2MZ 32.6
GTEX-13112-0011-R5b-SM-5DUV8 30.7
GTEX-13FHP-0011-R5b-SM-5LZY2 30.6
GTEX-S7PM-0011-R5A-SM-3NM8G 27.4
GTEX-13CF2-0011-R5a-SM-5LZWS 27.3
GTEX-1477Z-0011-R5b-SM-5PNUO 27.2
GTEX-13NZA-0011-R5b-SM-5KM4K 23.7
GTEX-145MG-0011-R5b-SM-5S2VU 21.6
Show all

CAUDATE - FANTOM5 CAGE

Average Tags Per Million

48.3

FANTOM5 sample id

Sample description

Tags Per Million

Caudate nucleus
Tags Per Million: 48.3
FF:10164-103B2 76 years, female 50.8
FF:10379-105H1 89 years, female 45.8

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