We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
Fields »
 

Field

Term
Gene name

Class

Subclass

Chromosome

External id

In atlas

Reliability

Reliability

Reliability

Validation

Method

Validation

Method

Validation

Method

Validation

Location

Searches

Tissue

Cell type

Expression

Tissue

Specificity

Cell line

Specificity

Tissue

Detectable

Cell line

Detectable

Category

Score

Score

Score

Antibodies

Column

 
 
ABOUT
HELP
BLOG
  • THE HUMAN PROTEOME
  • THE HUMAN TISSUES
  • THE HUMAN CELL
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
    • NEWS
    • BLOG
    • EVENTS
    • PRESS ROOM
    • LEARN
    • DICTIONARY
    • METHODS
    • CELL LINES
  • THE PROJECT
  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS
  • PUBLICATION DATA
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • LINKS
  • CONTACT
  • TECHNICAL DATA
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • DOWNLOADABLE DATA
  • HELP & FAQ
  • LICENCE & CITATION
  • PRIVACY STATEMENT
  • RELEASE HISTORY
RXRA
  • premium

    TISSUE

  • premium

    CELL

  • CANCER

TISSUE ATLAS PRIMARY DATA CAUDATE

GENE/PROTEIN

Antibody validation


Dictionary

Caudate

CAUDATE - Expression summary

Protein expression

h
m
l
n

RNA expression

GTEx:7.6RPKM
FANTOM5:58.5Tags Per Million

CAUDATE - Annotated protein expression

Annotated protein
expression

Glial cells:High
Neuronal cells:High
 

Antibody staining

Antibody CAB004565

 

Antibody CAB005352

 

Glial cells

High   Not detected  

Neuronal cells

High   Low  
   
   
   

CAUDATE - HPA RNA-seq

Pending HPA RNA-seq analysis


CAUDATE - GTEx RNA-seq

Average RPKM

7.6

GTEx sample id

RPKM

5.97.28.82.512.80246810121416
 
5.97.28.82.512.80246810121416

Brain - Caudate (basal ganglia)

Brain - Caudate (basal ganglia)
RPKM: 7.6
Samples: 117

Max RPKM: 17
Min RPKM: 2.5
Std RPKM: 2.5
Median RPKM: 7.2
GTEX-XMD1-0011-R5A-SM-4AT47 17.0
GTEX-144GO-0011-R5a-SM-5PNUR 15.3
GTEX-X261-0011-R5A-SM-3NMB4 13.8
GTEX-NPJ8-0011-R5a-SM-2HMJY 13.3
GTEX-13JVG-0011-R5a-SM-5MR4O 12.8
GTEX-13OVJ-0011-R5a-SM-5P9H7 12.8
GTEX-NL4W-0011-R5a-SM-2I3GD 12.6
GTEX-1445S-0011-R5a-SM-5PNUS 12.5
GTEX-13X6I-0011-R5a-SM-5PNWW 11.8
GTEX-13JUV-0011-R5a-SM-5LZY5 11.6
GTEX-13SLW-0011-R5b-SM-5SI6Z 11.4
GTEX-12ZZW-0011-R5a-SM-5DUVN 11.0
GTEX-X4XX-0011-R5A-SM-46MWN 11.0
GTEX-13NYS-0011-R5a-SM-5MR4D 10.7
GTEX-13OW5-0011-R5b-SM-5L3FR 10.7
GTEX-N7MT-0011-R5a-SM-2I3G6 10.4
GTEX-ZF28-0011-R5a-SM-4WWCZ 10.2
GTEX-13CZV-0011-R5a-SM-5K7XA 9.8
GTEX-ZAB4-0011-R5a-SM-4SOKC 9.8
GTEX-13OVH-0011-R5b-SM-5KM4L 9.6
GTEX-14BIM-0011-R5b-SM-5S2RM 9.3
GTEX-11UD1-0011-R5b-SM-5P9FP 9.2
GTEX-132Q8-0011-R5a-SM-5IJDM 9.2
GTEX-QVJO-0011-R5A-SM-2S1QM 9.2
GTEX-11GSP-0011-R5a-SM-57WBE 9.1
GTEX-ZV68-0011-R5a-SM-4YCDW 9.1
GTEX-OHPN-0011-R5A-SM-2I5FF 9.0
GTEX-13PLJ-0011-R5a-SM-5O9BG 8.9
GTEX-Q2AG-0011-R5A-SM-2HMJH 8.9
GTEX-13OW6-0011-R5a-SM-5O9BK 8.8
GTEX-11H98-0011-R5b-SM-57WCF 8.7
GTEX-12WSB-0011-R5b-SM-5GU67 8.6
GTEX-RVPV-0011-R5A-SM-2TF69 8.6
GTEX-T5JC-0011-R5A-SM-32PLK 8.6
GTEX-RU72-0011-R5A-SM-2TF6U 8.4
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 8.3
GTEX-12WSM-0011-R5a-SM-5EQ4Y 8.2
GTEX-ZE9C-0011-R5a-SM-5EGLO 8.2
GTEX-ZXG5-0011-R5b-SM-57WBN 8.2
GTEX-12ZZX-0011-R5a-SM-5HL89 8.0
GTEX-13FLV-0011-R5a-SM-5LZWT 8.0
GTEX-139TS-0011-R5b-SM-5J2MZ 7.9
GTEX-13S7M-0011-R5b-SM-5P9HS 7.9
GTEX-S7PM-0011-R5A-SM-3NM8G 7.8
GTEX-ZVZQ-0011-R5b-SM-57WDC 7.8
GTEX-12ZZY-0011-R5a-SM-5EGL9 7.7
GTEX-13OW8-0011-R5b-SM-5L3FQ 7.7
GTEX-Y8DK-0011-R5B-SM-4RTW6 7.7
GTEX-13O3Q-0011-R5b-SM-5P9H4 7.6
GTEX-OXRN-0011-R5A-SM-2I5EF 7.6
GTEX-13RTJ-0011-R5a-SM-5P9HR 7.5
GTEX-NL3H-0011-R5a-SM-2I3GB 7.5
GTEX-ZE7O-0011-R5a-SM-57WBO 7.5
GTEX-R55E-0011-R5A-SM-2TC5N 7.4
GTEX-RVPU-0011-R5A-SM-2XCAD 7.4
GTEX-13FLW-0011-R5a-SM-5LZX6 7.3
GTEX-12WSA-0011-R5b-SM-5GU5I 7.2
GTEX-13CIG-0011-R5b-SM-5L3F2 7.2
GTEX-13FHO-0011-R5b-SM-5LZZ3 7.2
GTEX-1477Z-0011-R5b-SM-5PNUO 7.2
GTEX-ZVT3-0011-R5a-SM-51MSI 7.2
GTEX-11WQC-0011-R5a-SM-5BC74 7.1
GTEX-12WSD-0011-R5b-SM-5CVNG 7.0
GTEX-139T8-0011-R5b-SM-5J1MO 7.0
GTEX-13N1W-0011-R5b-SM-5MR5Q 7.0
GTEX-NPJ7-0011-R5a-SM-33HBK 7.0
GTEX-139TT-0011-R5b-SM-5K7W8 6.8
GTEX-13NYB-0011-R5a-SM-5MR45 6.8
GTEX-13X6K-0011-R5b-SM-5PNUE 6.8
GTEX-T6MN-0011-R5A-SM-32QPD 6.8
GTEX-13OVL-0011-R5b-SM-5L3FU 6.7
GTEX-14BIN-0011-R5b-SM-5SI78 6.7
GTEX-PWO3-0011-R5A-SM-2I5EZ 6.7
GTEX-13FHP-0011-R5b-SM-5LZY2 6.6
GTEX-WVLH-0011-R5A-SM-3MJFW 6.6
GTEX-13OW7-0011-R5b-SM-5O9DM 6.4
GTEX-WWYW-0011-R5A-SM-3NB3E 6.4
GTEX-13G51-0011-R5a-SM-5L3EB 6.3
GTEX-13PVQ-0011-R5b-SM-5O9DI 6.3
GTEX-131YS-0011-R5b-SM-5K7YB 6.2
GTEX-S7SE-0011-R5A-SM-2XCDA 6.2
GTEX-TSE9-0011-R5A-SM-3DB7J 6.2
GTEX-YJ89-0011-R5a-SM-4V6GM 6.2
GTEX-12WSH-0011-R5b-SM-5P9F3 6.1
GTEX-13112-0011-R5b-SM-5DUV8 6.1
GTEX-13FXS-0011-R5b-SM-5LZYE 6.1
GTEX-XOTO-0011-R5A-SM-4B657 6.0
GTEX-WZTO-0011-R5B-SM-3NMC5 5.9
GTEX-13CF2-0011-R5a-SM-5LZWS 5.8
GTEX-13SLX-0011-R5a-SM-5O9BV 5.8
GTEX-144GL-0011-R5b-SM-5PNUJ 5.8
GTEX-145MG-0011-R5b-SM-5S2VU 5.8
GTEX-145LS-0011-R5a-SM-5SI65 5.7
GTEX-YFC4-0011-R5a-SM-4RGLR 5.6
GTEX-13VXU-0011-R5a-SM-5O9D7 5.5
GTEX-N7MS-0011-R5a-SM-2HMK8 5.5
GTEX-145MH-0011-R5a-SM-5P9JT 5.4
GTEX-QMR6-0011-R5A-SM-32PKT 5.4
GTEX-11OF3-0011-R5a-SM-57WB4 5.3
GTEX-1399T-0011-R5b-SM-5IJDK 5.3
GTEX-ZUA1-0011-R5b-SM-51MTG 5.3
GTEX-12WSC-0011-R5b-SM-5CVNS 5.2
GTEX-13NZA-0011-R5b-SM-5KM4K 5.2
GTEX-13O3O-0011-R5b-SM-5KM44 5.1
GTEX-13X6J-0011-R5b-SM-5PNWT 4.8
GTEX-14ABY-0011-R5b-SM-5SI7B 4.8
GTEX-P44H-0011-R5A-SM-2XCEX 4.7
GTEX-11NV4-0011-R5a-SM-5NQ88 4.6
GTEX-WHSE-0011-R5A-SM-3P5ZO 4.6
GTEX-12WSF-0011-R5a-SM-5HL8K 4.4
GTEX-1313W-0011-R5b-SM-5L3EP 4.3
GTEX-UTHO-0011-R5A-SM-3GIJD 4.3
GTEX-X585-0011-R5A-SM-46MVI 4.1
GTEX-PVOW-0011-R5A-SM-32PL7 3.9
GTEX-WL46-0011-R5A-SM-3LK6V 3.6
GTEX-Z93S-0011-R5b-SM-4RGNI 3.3
GTEX-T2IS-0011-R5A-SM-32QP4 2.5
Show all

CAUDATE - FANTOM5 CAGE

Average Tags Per Million

58.5

FANTOM5 sample id

Sample description

Tags Per Million

Caudate nucleus
Tags Per Million: 58.5
FF:10164-103B2 76 years, female 78.1
FF:10379-105H1 89 years, female 38.9

Contact

  • BLOG
  • PRESS ROOM
  • contact@proteinatlas.org

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS
  • DOWNLOADABLE DATA

The Human Protein Atlas

  • ANTIBODY AVAILABILITY
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.