We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
Fields »
 

Field

Term
Gene name

Class

Subclass

Chromosome

External id

In atlas

Reliability

Reliability

Reliability

Validation

Method

Validation

Method

Validation

Method

Validation

Location

Searches

Tissue

Cell type

Expression

Tissue

Specificity

Cell line

Specificity

Tissue

Detectable

Cell line

Detectable

Category

Score

Score

Score

Antibodies

Column

 
 
ABOUT
HELP
BLOG
  • THE HUMAN PROTEOME
  • THE HUMAN TISSUES
  • THE HUMAN CELL
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
    • NEWS
    • BLOG
    • EVENTS
    • PRESS ROOM
    • LEARN
    • DICTIONARY
    • METHODS
    • CELL LINES
  • THE PROJECT
  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS
  • PUBLICATION DATA
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • LINKS
  • CONTACT
  • TECHNICAL DATA
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • DOWNLOADABLE DATA
  • HELP & FAQ
  • LICENCE & CITATION
  • PRIVACY STATEMENT
  • RELEASE HISTORY
XRCC6
  • premium

    TISSUE

  • premium

    CELL

  • CANCER

TISSUE ATLAS PRIMARY DATA CAUDATE

GENE/PROTEIN

Antibody validation


Dictionary

Caudate

CAUDATE - Expression summary

Protein expression

h
m
l
n

RNA expression

GTEx:41.3RPKM
FANTOM5:146.6Tags Per Million

CAUDATE - Annotated protein expression

Annotated protein
expression

Glial cells:Low
Neuronal cells:Medium
 

Antibody staining

Antibody HPA047549

 

Antibody HPA062226

 

Antibody CAB004254

 

Glial cells

High   Low   High  

Neuronal cells

High   Medium   High  
     
     
     

CAUDATE - HPA RNA-seq

Pending HPA RNA-seq analysis


CAUDATE - GTEx RNA-seq

Average RPKM

41.3

GTEx sample id

RPKM

 

Brain - Caudate (basal ganglia)

Brain - Caudate (basal ganglia)
RPKM: 41.3
Samples: 117

Max RPKM: 70.8
Min RPKM: 15.7
Std RPKM: 10.7
Median RPKM: 41.6
GTEX-P44H-0011-R5A-SM-2XCEX 70.8
GTEX-T6MN-0011-R5A-SM-32QPD 62.9
GTEX-T2IS-0011-R5A-SM-32QP4 62.8
GTEX-13G51-0011-R5a-SM-5L3EB 60.8
GTEX-X585-0011-R5A-SM-46MVI 58.9
GTEX-132Q8-0011-R5a-SM-5IJDM 58.5
GTEX-WHSE-0011-R5A-SM-3P5ZO 58.5
GTEX-12WSA-0011-R5b-SM-5GU5I 56.9
GTEX-13X6K-0011-R5b-SM-5PNUE 56.3
GTEX-13FHO-0011-R5b-SM-5LZZ3 54.7
GTEX-131YS-0011-R5b-SM-5K7YB 54.6
GTEX-13RTJ-0011-R5a-SM-5P9HR 54.5
GTEX-ZUA1-0011-R5b-SM-51MTG 54.4
GTEX-11H98-0011-R5b-SM-57WCF 54.3
GTEX-N7MT-0011-R5a-SM-2I3G6 54.3
GTEX-QVJO-0011-R5A-SM-2S1QM 54.1
GTEX-ZAB4-0011-R5a-SM-4SOKC 53.4
GTEX-12WSB-0011-R5b-SM-5GU67 53.3
GTEX-13JUV-0011-R5a-SM-5LZY5 53.1
GTEX-1399T-0011-R5b-SM-5IJDK 52.8
GTEX-S7SE-0011-R5A-SM-2XCDA 52.7
GTEX-12WSC-0011-R5b-SM-5CVNS 50.6
GTEX-13N1W-0011-R5b-SM-5MR5Q 50.3
GTEX-WL46-0011-R5A-SM-3LK6V 50.3
GTEX-UTHO-0011-R5A-SM-3GIJD 50.2
GTEX-WWYW-0011-R5A-SM-3NB3E 50.0
GTEX-1313W-0011-R5b-SM-5L3EP 49.2
GTEX-TSE9-0011-R5A-SM-3DB7J 49.0
GTEX-Q2AG-0011-R5A-SM-2HMJH 48.4
GTEX-RU72-0011-R5A-SM-2TF6U 48.1
GTEX-WVLH-0011-R5A-SM-3MJFW 48.0
GTEX-WZTO-0011-R5B-SM-3NMC5 48.0
GTEX-13X6I-0011-R5a-SM-5PNWW 47.7
GTEX-139TT-0011-R5b-SM-5K7W8 46.7
GTEX-14BIM-0011-R5b-SM-5S2RM 46.5
GTEX-N7MS-0011-R5a-SM-2HMK8 46.4
GTEX-13NYS-0011-R5a-SM-5MR4D 46.3
GTEX-OHPN-0011-R5A-SM-2I5FF 45.9
GTEX-XMD1-0011-R5A-SM-4AT47 45.8
GTEX-13OVJ-0011-R5a-SM-5P9H7 45.5
GTEX-11GSP-0011-R5a-SM-57WBE 44.9
GTEX-13FLV-0011-R5a-SM-5LZWT 44.5
GTEX-NPJ8-0011-R5a-SM-2HMJY 44.2
GTEX-12ZZY-0011-R5a-SM-5EGL9 44.1
GTEX-T5JC-0011-R5A-SM-32PLK 44.1
GTEX-13SLW-0011-R5b-SM-5SI6Z 43.9
GTEX-13OW6-0011-R5a-SM-5O9BK 43.5
GTEX-QMR6-0011-R5A-SM-32PKT 43.5
GTEX-PVOW-0011-R5A-SM-32PL7 43.4
GTEX-12WSF-0011-R5a-SM-5HL8K 43.3
GTEX-R55E-0011-R5A-SM-2TC5N 43.2
GTEX-11OF3-0011-R5a-SM-57WB4 43.1
GTEX-13O3Q-0011-R5b-SM-5P9H4 42.9
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 42.5
GTEX-13O3O-0011-R5b-SM-5KM44 42.4
GTEX-13NYB-0011-R5a-SM-5MR45 42.1
GTEX-145LS-0011-R5a-SM-5SI65 42.0
GTEX-13OW8-0011-R5b-SM-5L3FQ 41.9
GTEX-PWO3-0011-R5A-SM-2I5EZ 41.6
GTEX-13X6J-0011-R5b-SM-5PNWT 41.5
GTEX-NL4W-0011-R5a-SM-2I3GD 41.5
GTEX-14ABY-0011-R5b-SM-5SI7B 41.3
GTEX-13VXU-0011-R5a-SM-5O9D7 41.2
GTEX-13JVG-0011-R5a-SM-5MR4O 41.1
GTEX-RVPV-0011-R5A-SM-2TF69 41.1
GTEX-145MH-0011-R5a-SM-5P9JT 40.9
GTEX-RVPU-0011-R5A-SM-2XCAD 40.9
GTEX-13SLX-0011-R5a-SM-5O9BV 40.3
GTEX-11NV4-0011-R5a-SM-5NQ88 40.2
GTEX-13FXS-0011-R5b-SM-5LZYE 40.0
GTEX-139T8-0011-R5b-SM-5J1MO 39.5
GTEX-Y8DK-0011-R5B-SM-4RTW6 39.5
GTEX-12WSM-0011-R5a-SM-5EQ4Y 39.3
GTEX-13CZV-0011-R5a-SM-5K7XA 38.6
GTEX-144GO-0011-R5a-SM-5PNUR 38.4
GTEX-13OVL-0011-R5b-SM-5L3FU 38.3
GTEX-ZE9C-0011-R5a-SM-5EGLO 38.1
GTEX-X4XX-0011-R5A-SM-46MWN 38.0
GTEX-X261-0011-R5A-SM-3NMB4 37.8
GTEX-13OVH-0011-R5b-SM-5KM4L 37.4
GTEX-13S7M-0011-R5b-SM-5P9HS 37.2
GTEX-13OW7-0011-R5b-SM-5O9DM 36.2
GTEX-13OW5-0011-R5b-SM-5L3FR 35.8
GTEX-Z93S-0011-R5b-SM-4RGNI 35.3
GTEX-NL3H-0011-R5a-SM-2I3GB 35.0
GTEX-ZE7O-0011-R5a-SM-57WBO 34.8
GTEX-XOTO-0011-R5A-SM-4B657 34.7
GTEX-13FLW-0011-R5a-SM-5LZX6 34.0
GTEX-YFC4-0011-R5a-SM-4RGLR 33.5
GTEX-NPJ7-0011-R5a-SM-33HBK 32.8
GTEX-12WSD-0011-R5b-SM-5CVNG 32.7
GTEX-12ZZW-0011-R5a-SM-5DUVN 32.0
GTEX-1445S-0011-R5a-SM-5PNUS 31.6
GTEX-139TS-0011-R5b-SM-5J2MZ 30.9
GTEX-13PVQ-0011-R5b-SM-5O9DI 30.7
GTEX-12ZZX-0011-R5a-SM-5HL89 30.2
GTEX-13CIG-0011-R5b-SM-5L3F2 30.0
GTEX-14BIN-0011-R5b-SM-5SI78 30.0
GTEX-OXRN-0011-R5A-SM-2I5EF 30.0
GTEX-ZVZQ-0011-R5b-SM-57WDC 29.6
GTEX-ZF28-0011-R5a-SM-4WWCZ 29.5
GTEX-13PLJ-0011-R5a-SM-5O9BG 29.3
GTEX-ZXG5-0011-R5b-SM-57WBN 29.3
GTEX-ZVT3-0011-R5a-SM-51MSI 27.2
GTEX-11WQC-0011-R5a-SM-5BC74 26.6
GTEX-ZV68-0011-R5a-SM-4YCDW 26.3
GTEX-13112-0011-R5b-SM-5DUV8 25.8
GTEX-144GL-0011-R5b-SM-5PNUJ 24.6
GTEX-12WSH-0011-R5b-SM-5P9F3 23.5
GTEX-13CF2-0011-R5a-SM-5LZWS 23.1
GTEX-13FHP-0011-R5b-SM-5LZY2 22.9
GTEX-11UD1-0011-R5b-SM-5P9FP 22.5
GTEX-YJ89-0011-R5a-SM-4V6GM 22.4
GTEX-1477Z-0011-R5b-SM-5PNUO 21.1
GTEX-S7PM-0011-R5A-SM-3NM8G 20.8
GTEX-13NZA-0011-R5b-SM-5KM4K 17.5
GTEX-145MG-0011-R5b-SM-5S2VU 15.7
Show all

CAUDATE - FANTOM5 CAGE

Average Tags Per Million

146.6

FANTOM5 sample id

Sample description

Tags Per Million

Caudate nucleus
Tags Per Million: 146.6
FF:10164-103B2 76 years, female 152.7
FF:10379-105H1 89 years, female 140.6

Contact

  • BLOG
  • PRESS ROOM
  • contact@proteinatlas.org

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS
  • DOWNLOADABLE DATA

The Human Protein Atlas

  • ANTIBODY AVAILABILITY
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.