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TISSUE ATLAS PRIMARY DATA CEREBRAL CORTEX
MOUSE BRAIN

GENE/PROTEIN

Antibody validation


Dictionary

Cerebral cortex

Tissue proteome

Brain
Extended brain samples

CEREBRAL CORTEX - Expression summary

Protein expression

h
m
l
n

RNA expression

HPA:2938.8TPM
GTEx:445.3RPKM

CEREBRAL CORTEX - Annotated protein expression

Annotated protein
expression

Endothelial cells:Not detected
Glial cells:Not detected
Neuronal cells:Not detected
Neuropil:Medium
 

Antibody staining

Antibody HPA049222

 

Antibody CAB002300

 

Endothelial cells

Not detected   Medium  

Glial cells

Low   Not detected  

Neuronal cells

Not detected   Low  

Neuropil

Medium   Medium  
   
   
   

CEREBRAL CORTEX - HPA RNA-seq

Average TPM

2938.8

N/A Male, age 5
Sample 1
TPM: 2155.0
overview Female, age 40
Sample 2
TPM: 3415.2
Cell types%
Neuronal cells: 35
Glial cells and endothelial cells: 65
overview Male, age 70
Sample 3
TPM: 3246.1
Cell types%
Neuronal cells: 35
Glial cells and endothelial cells: 65

CEREBRAL CORTEX - GTEx RNA-seq

Average RPKM

445.3

GTEx sample id

RPKM

141.8244.8537.864.41106.405001,0001,5002,0002,5003,000
 
141.8244.8537.864.41106.405001,0001,5002,0002,5003,000

Brain - Cortex

Brain - Cortex
RPKM: 434.2
Samples: 114

Max RPKM: 3462.3
Min RPKM: 64.4
Std RPKM: 493.3
Median RPKM: 244.8
GTEX-13G51-3026-SM-5IJB8 3462.3
GTEX-N7MT-1126-SM-5SI7V 2214.4
GTEX-ZAJG-3126-SM-5HL9J 1792.3
GTEX-1445S-3026-SM-5O9BR 1671.8
GTEX-111FC-3126-SM-5GZZ2 1639.1
GTEX-1117F-3226-SM-5N9CT 1450.7
GTEX-13FHP-3026-SM-5IJBS 1314.1
GTEX-147GR-3026-SM-5S2ML 1283.7
GTEX-11GS4-3126-SM-5A5LH 1106.4
GTEX-13PVQ-3026-SM-5SI93 1065.2
GTEX-12ZZY-3026-SM-5GCOU 1054.5
GTEX-13FLW-1426-SM-5K7YE 998.0
GTEX-13FHO-3026-SM-5J1O9 938.2
GTEX-1192X-3126-SM-5N9BY 889.9
GTEX-13OW8-2826-SM-5L3GC 864.4
GTEX-Q2AG-2926-SM-2HMJ3 858.9
GTEX-13NYB-3026-SM-5IJD7 779.6
GTEX-1313W-3126-SM-5LZUI 668.3
GTEX-13OVJ-2826-SM-5L3GW 666.2
GTEX-YFC4-3126-SM-5PNV6 662.7
GTEX-12WSA-2926-SM-5EQ4D 659.7
GTEX-11OC5-0726-SM-5P9JK 641.2
GTEX-QDT8-2926-SM-32PKC 639.6
GTEX-145MG-3026-SM-5RQJA 635.3
GTEX-QVUS-2826-SM-3GADB 623.3
GTEX-NPJ8-1526-SM-2D7VU 606.4
GTEX-11NV4-2126-SM-5N9DS 597.7
GTEX-XOTO-3026-SM-4B65M 588.5
GTEX-WHSE-3026-SM-3P5ZH 545.2
GTEX-11ONC-2926-SM-5P9JM 515.4
GTEX-11WQK-3026-SM-5EQL6 506.6
GTEX-X585-3026-SM-46MWF 487.5
GTEX-WL46-2926-SM-3LK82 484.2
GTEX-13OVH-3026-SM-5MR4N 446.9
GTEX-UTHO-3026-SM-3GAFB 446.2
GTEX-11O72-2926-SM-5BC4V 441.1
GTEX-13SLX-3126-SM-5S2Q5 418.0
GTEX-13JUV-2926-SM-5LZX7 414.1
GTEX-13OW6-3026-SM-5J2MI 373.6
GTEX-NPJ7-2726-SM-2I3FT 368.8
GTEX-145MF-2726-SM-5O995 366.5
GTEX-13OW7-3026-SM-5L3GY 362.4
GTEX-QMR6-1426-SM-32PLA 352.3
GTEX-13VXU-2926-SM-5LU5C 344.5
GTEX-T6MN-2626-SM-32PMQ 330.9
GTEX-12WSD-3126-SM-5HL7P 327.6
GTEX-11DXW-1126-SM-5H12Q 323.0
GTEX-XLM4-3026-SM-4AT6L 321.9
GTEX-11OF3-2926-SM-5HL78 289.1
GTEX-WWYW-3126-SM-3NB39 283.2
GTEX-13O3O-3126-SM-5KM3H 273.7
GTEX-12ZZX-2926-SM-5GCOQ 272.7
GTEX-13PL6-3126-SM-5LUAR 272.7
GTEX-11EMC-3226-SM-5EGKW 271.0
GTEX-YJ89-3026-SM-5IFJI 257.3
GTEX-13O3Q-2926-SM-5KM45 255.6
GTEX-ZYFD-3026-SM-5E44C 253.9
GTEX-13IVO-2926-SM-5L3CZ 235.7
GTEX-14ASI-3026-SM-5S2PN 231.7
GTEX-RU72-3026-SM-5SI7Y 228.0
GTEX-11TTK-2926-SM-5PNYP 222.0
GTEX-11ZUS-2926-SM-5FQSL 213.8
GTEX-PWO3-0926-SM-2I5EY 213.0
GTEX-12ZZW-2926-SM-5LZUP 212.8
GTEX-11DXY-3226-SM-5GIDE 209.2
GTEX-13X6J-3026-SM-5Q5CU 206.0
GTEX-Y8DK-0826-SM-4TT3T 204.2
GTEX-12WSH-3026-SM-5CVNI 199.7
GTEX-Y111-2726-SM-4TT3N 198.8
GTEX-T5JC-2426-SM-3NMDB 195.4
GTEX-13S7M-3126-SM-5RQJQ 194.0
GTEX-11GSP-3226-SM-5986O 193.1
GTEX-144GL-3026-SM-5Q5CW 185.0
GTEX-WVLH-3026-SM-3MJG9 184.0
GTEX-14A5I-2926-SM-5Q5CQ 177.8
GTEX-145LS-3126-SM-5Q5BY 165.6
GTEX-13QIC-2926-SM-5J2NF 163.5
GTEX-139T8-1026-SM-5J2MC 163.1
GTEX-14BMV-3026-SM-5S2PQ 159.9
GTEX-11GSO-2926-SM-5HL73 159.0
GTEX-ZZPT-3026-SM-5GZXH 150.6
GTEX-13NYS-3126-SM-5KLYV 149.7
GTEX-13X6K-2926-SM-5Q5D5 148.9
GTEX-OXRN-2426-SM-2I5EQ 146.1
GTEX-ZAK1-3026-SM-5S2MJ 143.8
GTEX-ZVT3-3026-SM-5E43N 141.1
GTEX-1128S-2726-SM-5H12C 140.3
GTEX-1399T-3026-SM-5KLZC 140.3
GTEX-11PRG-2926-SM-5987A 139.8
GTEX-13JVG-3126-SM-5L3FH 139.8
GTEX-117XS-3026-SM-5N9CA 139.3
GTEX-RNOR-2326-SM-2TF4I 134.4
GTEX-ZE7O-3126-SM-5HL5X 133.6
GTEX-12WSC-3026-SM-5GCNF 132.7
GTEX-QVJO-1426-SM-2S1QY 130.7
GTEX-12126-1026-SM-5P9JJ 129.5
GTEX-12ZZZ-3026-SM-5BC67 127.9
GTEX-144FL-3026-SM-5O99C 126.6
GTEX-R55F-1326-SM-5S2V4 126.0
GTEX-131XW-3126-SM-5LZUC 125.6
GTEX-145MH-3026-SM-5Q5DZ 120.0
GTEX-11EI6-3026-SM-5GZZO 119.5
GTEX-PVOW-2526-SM-2XCF7 114.6
GTEX-Z93S-2926-SM-57WB9 107.0
GTEX-X4XX-3026-SM-3NMB2 102.2
GTEX-13FXS-3126-SM-5J2NN 89.9
GTEX-131YS-3126-SM-5KLYT 85.2
GTEX-11NUK-2926-SM-5A5MD 83.2
GTEX-ZUA1-3026-SM-59HJC 80.4
GTEX-13NYC-2826-SM-5K7WR 79.9
GTEX-WZTO-2926-SM-3NM9I 72.8
GTEX-TSE9-3026-SM-3DB76 72.1
GTEX-T2IS-3026-SM-32QPM 65.2
GTEX-132Q8-3026-SM-5PNVG 64.4
Show all
155.9249.3406.557.8686.605001,0001,5002,0002,5003,0003,5004,0004,5005,0005,5006,0006,500
 
155.9249.3406.557.8686.605001,0001,5002,0002,5003,0003,5004,0004,5005,0005,5006,0006,500

Brain - Frontal Cortex (BA9)

Brain - Frontal Cortex (BA9)
RPKM: 457.1
Samples: 108

Max RPKM: 6654.1
Min RPKM: 57.8
Std RPKM: 780.6
Median RPKM: 249.3
GTEX-ZE7O-0011-R10a-SM-57WAZ 6654.1
GTEX-13JVG-0011-R10b-SM-5KM2P 3581.3
GTEX-XMD1-0011-R10A-SM-4AT4A 2856.3
GTEX-ZDXO-0011-R10a-SM-4WWD8 2091.6
GTEX-13FLW-0011-R10b-SM-5LZZF 1441.3
GTEX-12WSD-0011-R10b-SM-5GU79 1347.3
GTEX-X261-0011-R10B-SM-4E3JT 1215.7
GTEX-ZAB4-0011-R10a-SM-4SOKH 995.4
GTEX-ZXG5-0011-R10a-SM-57WDD 986.8
GTEX-13FLV-0011-R10b-SM-5LZZ2 928.6
GTEX-YFC4-0011-R10a-SM-4SOK5 911.3
GTEX-12WSA-0011-R10b-SM-5P9ET 893.5
GTEX-RVPU-0011-R10A-SM-2XCAH 877.0
GTEX-145LU-0011-R10a-SM-5PNWJ 686.6
GTEX-13CZV-0011-R10b-SM-5LZYD 671.1
GTEX-13IVO-0011-R10a-SM-5LZY3 581.9
GTEX-WWYW-0011-R10A-SM-3NB35 560.2
GTEX-N7MT-0011-R10A-SM-2I3E1 548.3
GTEX-139TS-0011-R10a-SM-5K7TU 520.4
GTEX-13G51-0011-R10b-SM-5LZYF 501.2
GTEX-147F4-0011-R10b-SM-5S2WC 499.4
GTEX-13OVL-0011-R10a-SM-5L3GS 484.8
GTEX-12ZZW-0011-R10b-SM-5HL9X 479.2
GTEX-P44H-0011-R10A-SM-2XCEK 464.1
GTEX-147GR-0011-R10b-SM-5S2UM 442.5
GTEX-13N1W-0011-R10b-SM-5MR4H 417.9
GTEX-131XW-0011-R10a-SM-5DUVA 413.5
GTEX-13O3O-0011-R10a-SM-5LUA9 404.2
GTEX-13X6I-0011-R10a-SM-5PNWI 401.6
GTEX-14753-0011-R10b-SM-5S2WE 395.1
GTEX-13X6K-0011-R10a-SM-5P9JR 369.8
GTEX-WVLH-0011-R10A-SM-3MJFM 354.4
GTEX-YJ89-0011-R10a-SM-4SOK9 346.1
GTEX-13QIC-0011-R10a-SM-5O9C7 345.3
GTEX-QVJO-0011-R10A-SM-2S1QJ 342.5
GTEX-ZVZQ-0011-R10b-SM-51MRT 342.1
GTEX-QDT8-0011-R10A-SM-32PKG 341.2
GTEX-13S7M-0011-R10b-SM-5PNZB 334.2
GTEX-11H98-0011-R10b-SM-5NQ98 332.3
GTEX-13QJC-0011-R10a-SM-5SI63 317.1
GTEX-11GSP-0011-R10a-SM-5NQ7J 306.6
GTEX-1445S-0011-R10a-SM-5PNWB 298.3
GTEX-145MH-0011-R10b-SM-5PNUK 288.8
GTEX-132Q8-0011-R10b-SM-5DUWZ 286.0
GTEX-ZVT3-0011-R10b-SM-57WB6 280.4
GTEX-13RTJ-0011-R10b-SM-5O9CW 276.1
GTEX-11WQK-0011-R10a-SM-5BC6R 276.0
GTEX-13FHO-0011-R10b-SM-5J2MM 274.4
GTEX-NPJ8-0011-R10A-SM-2YUMO 270.5
GTEX-1477Z-0011-R10b-SM-5S2RF 269.3
GTEX-12WSH-0011-R10a-SM-5LZUS 258.4
GTEX-XLM4-0011-R10A-SM-4AT5P 255.7
GTEX-S7SE-0011-R10A-SM-2XCDF 253.5
GTEX-11WQC-0011-R10a-SM-57WCT 250.6
GTEX-13JUV-0011-R10b-SM-5LZXR 248.1
GTEX-13FTZ-0011-R10b-SM-5KLZS 241.6
GTEX-OXRN-0011-R10A-SM-2I5GC 240.3
GTEX-13OVJ-0011-R10b-SM-5L3HT 235.2
GTEX-13NZA-0011-R10b-SM-5KM54 232.8
GTEX-12WSC-0011-R10a-SM-5GU57 232.1
GTEX-WZTO-0011-R10B-SM-4E3KB 230.7
GTEX-ZUA1-0011-R10a-SM-51MT6 226.5
GTEX-14BIN-0011-R10a-SM-5S2UA 223.2
GTEX-13FXS-0011-R10a-SM-5J2MA 216.9
GTEX-13OW8-0011-R10a-SM-5L3H6 212.9
GTEX-TSE9-0011-R10A-SM-3DB7O 206.0
GTEX-13NYB-0011-R10a-SM-5KM43 203.9
GTEX-OXRO-0011-R10A-SM-2I5EH 201.7
GTEX-12ZZZ-0011-R10a-SM-5P9HC 201.6
GTEX-13X6J-0011-R10b-SM-5PNWA 197.7
GTEX-145MG-0011-R10a-SM-5PNWG 191.5
GTEX-X585-0011-R10A-SM-46MUY 190.7
GTEX-13OW7-0011-R10a-SM-5L3H3 187.2
GTEX-ZV68-0011-R10a-SM-51MT7 183.9
GTEX-X4XX-0011-R10B-SM-46MWO 179.5
GTEX-145LS-0011-R10a-SM-5PNUQ 172.1
GTEX-12WSE-0011-R10b-SM-5P9JV 172.0
GTEX-13SLX-0011-R10a-SM-5P9HV 168.4
GTEX-QMR6-0011-R10A-SM-32PKO 167.1
GTEX-N7MS-0011-R10A-SM-2HMJK 163.9
GTEX-NL4W-0011-R10A-SM-2I3DY 156.6
GTEX-12WSF-0011-R10a-SM-5LZVH 153.9
GTEX-Z93S-0011-R10a-SM-4RGNM 151.4
GTEX-14ASI-0011-R10b-SM-5S2VZ 142.6
GTEX-Y8DK-0011-R10A-SM-4SOK1 142.6
GTEX-Q2AG-0011-R10A-SM-2HMLA 141.7
GTEX-T6MN-0011-R10A-SM-32QP7 141.7
GTEX-14BIL-0011-R10a-SM-5SI75 141.4
GTEX-131YS-0011-R10b-SM-5EQ5N 140.7
GTEX-13NYS-0011-R10a-SM-5MR4S 139.7
GTEX-13SLW-0011-R10a-SM-5S2UI 134.7
GTEX-ZF28-0011-R10a-SM-4WWEH 134.7
GTEX-13OW6-0011-R10a-SM-5L3HE 132.3
GTEX-QVUS-0011-R10A-SM-3GIK3 132.0
GTEX-12ZZY-0011-R10b-SM-5HL7W 130.2
GTEX-131XH-0011-R10a-SM-5EGLJ 129.2
GTEX-NL3H-0011-R10A-SM-2I3E9 128.4
GTEX-WL46-0011-R10A-SM-3MJFQ 122.5
GTEX-12WSM-0011-R10a-SM-5DUWV 120.4
GTEX-1313W-0011-R10b-SM-5DUXA 117.0
GTEX-12ZZX-0011-R10b-SM-5DUWK 114.2
GTEX-T5JC-0011-R10A-SM-32PM2 113.6
GTEX-NPJ7-0011-R10A-SM-2I3E5 107.7
GTEX-X4EP-0011-R10B-SM-4QASJ 106.4
GTEX-13O3Q-0011-R10b-SM-5KM39 103.3
GTEX-11ZUS-0011-R10b-SM-5BC79 93.8
GTEX-12126-0011-R10b-SM-5BC6T 83.0
GTEX-13N2G-0011-R10a-SM-5MR34 57.8
Show all

CEREBRAL CORTEX - FANTOM5 CAGE

No Fantom CAGE analysis found for this gene / tissue

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