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TISSUE ATLAS PRIMARY DATA CAUDATE

GENE/PROTEIN

Antibody validation


Dictionary

Caudate

CAUDATE - Expression summary

Protein expression

h
m
l
n

RNA expression

GTEx:29.6RPKM
FANTOM5:115.1Tags Per Million

CAUDATE - Annotated protein expression

Annotated protein
expression

Glial cells:High
Neuronal cells:High
 

Antibody staining

Antibody HPA038460

 

Antibody HPA038461

 

Antibody CAB075750

 

Antibody CAB075751

 

Antibody CAB075752

 

Antibody CAB075753

 

Antibody CAB075754

 

Glial cells

Low   Medium   High   High   Medium   Medium   High  

Neuronal cells

Medium   Medium   High   High   High   High   High  
             
             
             

CAUDATE - HPA RNA-seq

Pending HPA RNA-seq analysis


CAUDATE - GTEx RNA-seq

Average RPKM

29.6

GTEx sample id

RPKM

 

Brain - Caudate (basal ganglia)

Brain - Caudate (basal ganglia)
RPKM: 29.6
Samples: 117

Max RPKM: 46.6
Min RPKM: 10.3
Std RPKM: 7.5
Median RPKM: 30.9
GTEX-13NYS-0011-R5a-SM-5MR4D 46.6
GTEX-UTHO-0011-R5A-SM-3GIJD 45.8
GTEX-P44H-0011-R5A-SM-2XCEX 43.3
GTEX-QVJO-0011-R5A-SM-2S1QM 41.6
GTEX-X585-0011-R5A-SM-46MVI 41.4
GTEX-13FHO-0011-R5b-SM-5LZZ3 39.9
GTEX-13OVJ-0011-R5a-SM-5P9H7 39.4
GTEX-WWYW-0011-R5A-SM-3NB3E 39.4
GTEX-131YS-0011-R5b-SM-5K7YB 39.3
GTEX-N7MT-0011-R5a-SM-2I3G6 39.2
GTEX-WHSE-0011-R5A-SM-3P5ZO 38.8
GTEX-T6MN-0011-R5A-SM-32QPD 38.5
GTEX-PVOW-0011-R5A-SM-32PL7 38.3
GTEX-ZAB4-0011-R5a-SM-4SOKC 38.2
GTEX-WZTO-0011-R5B-SM-3NMC5 37.5
GTEX-13SLX-0011-R5a-SM-5O9BV 37.4
GTEX-T2IS-0011-R5A-SM-32QP4 37.2
GTEX-132Q8-0011-R5a-SM-5IJDM 37.1
GTEX-13G51-0011-R5a-SM-5L3EB 37.1
GTEX-WVLH-0011-R5A-SM-3MJFW 37.1
GTEX-13O3Q-0011-R5b-SM-5P9H4 37.0
GTEX-13RTJ-0011-R5a-SM-5P9HR 36.9
GTEX-13X6K-0011-R5b-SM-5PNUE 36.8
GTEX-N7MS-0011-R5a-SM-2HMK8 36.4
GTEX-Q2AG-0011-R5A-SM-2HMJH 36.3
GTEX-1313W-0011-R5b-SM-5L3EP 35.0
GTEX-11GSP-0011-R5a-SM-57WBE 34.8
GTEX-12ZZY-0011-R5a-SM-5EGL9 34.6
GTEX-14BIM-0011-R5b-SM-5S2RM 34.6
GTEX-R55E-0011-R5A-SM-2TC5N 34.5
GTEX-13OW6-0011-R5a-SM-5O9BK 34.2
GTEX-145LS-0011-R5a-SM-5SI65 34.1
GTEX-145MH-0011-R5a-SM-5P9JT 34.1
GTEX-13VXU-0011-R5a-SM-5O9D7 33.8
GTEX-XMD1-0011-R5A-SM-4AT47 33.7
GTEX-13O3O-0011-R5b-SM-5KM44 33.6
GTEX-NPJ8-0011-R5a-SM-2HMJY 33.5
GTEX-S7SE-0011-R5A-SM-2XCDA 33.4
GTEX-T5JC-0011-R5A-SM-32PLK 33.4
GTEX-13N1W-0011-R5b-SM-5MR5Q 33.3
GTEX-13OW8-0011-R5b-SM-5L3FQ 33.3
GTEX-QMR6-0011-R5A-SM-32PKT 33.3
GTEX-12WSF-0011-R5a-SM-5HL8K 33.0
GTEX-13JUV-0011-R5a-SM-5LZY5 32.9
GTEX-1399T-0011-R5b-SM-5IJDK 32.3
GTEX-12WSC-0011-R5b-SM-5CVNS 32.1
GTEX-13X6I-0011-R5a-SM-5PNWW 32.1
GTEX-NL3H-0011-R5a-SM-2I3GB 32.1
GTEX-11H98-0011-R5b-SM-57WCF 31.9
GTEX-13FXS-0011-R5b-SM-5LZYE 31.9
GTEX-PWO3-0011-R5A-SM-2I5EZ 31.8
GTEX-13X6J-0011-R5b-SM-5PNWT 31.6
GTEX-11OF3-0011-R5a-SM-57WB4 31.5
GTEX-14ABY-0011-R5b-SM-5SI7B 31.3
GTEX-RU72-0011-R5A-SM-2TF6U 31.3
GTEX-13OVL-0011-R5b-SM-5L3FU 31.2
GTEX-13OW5-0011-R5b-SM-5L3FR 31.1
GTEX-TSE9-0011-R5A-SM-3DB7J 30.9
GTEX-WL46-0011-R5A-SM-3LK6V 30.9
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 30.8
GTEX-ZUA1-0011-R5b-SM-51MTG 30.4
GTEX-13JVG-0011-R5a-SM-5MR4O 30.1
GTEX-13OVH-0011-R5b-SM-5KM4L 29.9
GTEX-13OW7-0011-R5b-SM-5O9DM 29.9
GTEX-OHPN-0011-R5A-SM-2I5FF 29.7
GTEX-13SLW-0011-R5b-SM-5SI6Z 29.6
GTEX-13FLW-0011-R5a-SM-5LZX6 29.5
GTEX-13NYB-0011-R5a-SM-5MR45 29.4
GTEX-X261-0011-R5A-SM-3NMB4 29.3
GTEX-X4XX-0011-R5A-SM-46MWN 29.3
GTEX-139TT-0011-R5b-SM-5K7W8 29.2
GTEX-13FLV-0011-R5a-SM-5LZWT 29.1
GTEX-11NV4-0011-R5a-SM-5NQ88 28.6
GTEX-NL4W-0011-R5a-SM-2I3GD 28.4
GTEX-Y8DK-0011-R5B-SM-4RTW6 28.4
GTEX-12WSB-0011-R5b-SM-5GU67 28.2
GTEX-13S7M-0011-R5b-SM-5P9HS 27.9
GTEX-13CZV-0011-R5a-SM-5K7XA 27.8
GTEX-YFC4-0011-R5a-SM-4RGLR 27.6
GTEX-ZE9C-0011-R5a-SM-5EGLO 26.9
GTEX-RVPV-0011-R5A-SM-2TF69 26.8
GTEX-144GO-0011-R5a-SM-5PNUR 25.7
GTEX-12ZZX-0011-R5a-SM-5HL89 25.5
GTEX-ZE7O-0011-R5a-SM-57WBO 25.5
GTEX-12WSD-0011-R5b-SM-5CVNG 25.1
GTEX-OXRN-0011-R5A-SM-2I5EF 25.0
GTEX-RVPU-0011-R5A-SM-2XCAD 24.8
GTEX-XOTO-0011-R5A-SM-4B657 24.7
GTEX-ZF28-0011-R5a-SM-4WWCZ 24.4
GTEX-ZVZQ-0011-R5b-SM-57WDC 24.2
GTEX-Z93S-0011-R5b-SM-4RGNI 24.1
GTEX-ZXG5-0011-R5b-SM-57WBN 23.6
GTEX-14BIN-0011-R5b-SM-5SI78 23.1
GTEX-12WSM-0011-R5a-SM-5EQ4Y 22.9
GTEX-12ZZW-0011-R5a-SM-5DUVN 22.9
GTEX-1445S-0011-R5a-SM-5PNUS 22.9
GTEX-139TS-0011-R5b-SM-5J2MZ 22.6
GTEX-13CIG-0011-R5b-SM-5L3F2 22.0
GTEX-13PVQ-0011-R5b-SM-5O9DI 21.8
GTEX-144GL-0011-R5b-SM-5PNUJ 21.1
GTEX-NPJ7-0011-R5a-SM-33HBK 20.9
GTEX-12WSA-0011-R5b-SM-5GU5I 20.2
GTEX-139T8-0011-R5b-SM-5J1MO 19.9
GTEX-ZV68-0011-R5a-SM-4YCDW 18.9
GTEX-13PLJ-0011-R5a-SM-5O9BG 18.6
GTEX-11WQC-0011-R5a-SM-5BC74 18.5
GTEX-13112-0011-R5b-SM-5DUV8 18.2
GTEX-ZVT3-0011-R5a-SM-51MSI 18.2
GTEX-11UD1-0011-R5b-SM-5P9FP 16.9
GTEX-YJ89-0011-R5a-SM-4V6GM 15.7
GTEX-12WSH-0011-R5b-SM-5P9F3 15.3
GTEX-13FHP-0011-R5b-SM-5LZY2 14.3
GTEX-S7PM-0011-R5A-SM-3NM8G 14.0
GTEX-13CF2-0011-R5a-SM-5LZWS 13.6
GTEX-1477Z-0011-R5b-SM-5PNUO 12.9
GTEX-145MG-0011-R5b-SM-5S2VU 12.2
GTEX-13NZA-0011-R5b-SM-5KM4K 10.3
Show all

CAUDATE - FANTOM5 CAGE

Average Tags Per Million

115.1

FANTOM5 sample id

Sample description

Tags Per Million

Caudate nucleus
Tags Per Million: 115.1
FF:10379-105H1 89 years, female 132.1
FF:10164-103B2 76 years, female 98.0

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