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Field

Term
Gene name

Class

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External id

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Reliability

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Method

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Method

Validation

Method

Validation

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Searches

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Cell type

Expression

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Specificity

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Specificity

Tissue

Detectable

Cell line

Detectable

Category

Score

Score

Score

Antibodies

Column

 
 
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TISSUE ATLAS PRIMARY DATA KIDNEY

GENE/PROTEIN

Antibody validation


Dictionary

Kidney

Tissue proteome

Kidney

KIDNEY - Expression summary

Protein expression

h
m
l
n

RNA expression

HPA:80.0TPM
GTEx:51.5RPKM
FANTOM5:186.2Tags Per Million

KIDNEY - Annotated protein expression

Annotated protein
expression

Cells in glomeruli:Medium
Cells in tubules:High
 

Antibody staining

Antibody HPA038460

 

Antibody HPA038461

 

Antibody CAB075750

 

Antibody CAB075751

 

Antibody CAB075752

 

Antibody CAB075753

 

Antibody CAB075754

 

Cells in glomeruli

Not detected   Medium   High   High   Medium   High   High  

Cells in tubules

High   High   High   High   High   High   High  
             
             
             

KIDNEY - HPA RNA-seq

Average TPM

80.0

overview Female, age 58
Sample 1
TPM: 74.3
Cell types%
Cells in tubules: 60
Cells in glomeruli: 20
Fibroblasts: 5
Other cell types: 15
overview Female, age 67
Sample 2
TPM: 60.4
Cell types%
Cells in tubules: 70
Cells in glomeruli: 15
Fibroblasts: 10
Other cell types: 5
overview Female, age 55
Sample 3
TPM: 81.4
Cell types%
Cells in tubules: 80
Cells in glomeruli: 10
Fibroblasts: 5
Other cell types: 5
overview Male, age 46
Sample 4
TPM: 60.9
Cell types%
Cells in tubules: 60
Cells in glomeruli: 25
Fibroblasts: 5
Other cell types: 10
overview Female, age 57
Sample 5
TPM: 64.9
Cell types%
Cells in tubules: 60
Cells in glomeruli: 10
Fibroblasts: 10
Other cell types: 20
overview Male, age 78
Sample 6
TPM: 116.9
Cell types%
Cells in tubules: 65
Cells in glomeruli: 10
Fibroblasts: 5
Other cell types: 20
overview Male, age 73
Sample 7
TPM: 59.4
Cell types%
Cells in tubules: 60
Cells in glomeruli: 10
Fibroblasts: 10
Other cell types: 20
overview Female, age 59
Sample 8
TPM: 107.0
Cell types%
Cells in tubules: 65
Cells in glomeruli: 10
Fibroblasts: 10
Other cell types: 15
overview Female, age 48
Sample 9
TPM: 95.3
Cell types%
Cells in tubules: 60
Cells in glomeruli: 5
Fibroblasts: 10
Other cell types: 25

KIDNEY - GTEx RNA-seq

Average RPKM

51.5

GTEx sample id

RPKM

 

Kidney - Cortex

Kidney - Cortex
RPKM: 51.5
Samples: 32

Max RPKM: 79.1
Min RPKM: 19.3
Std RPKM: 14.1
Median RPKM: 52.5
GTEX-QLQW-1626-SM-4R1K1 79.1
GTEX-12696-0926-SM-5FQTV 77.6
GTEX-QDVN-1626-SM-48TZC 73.9
GTEX-ZYFG-1626-SM-5GZYY 72.3
GTEX-UPIC-1126-SM-4IHLO 67.2
GTEX-XPVG-0526-SM-4B65N 63.9
GTEX-145MN-0326-SM-5QGQI 60.5
GTEX-12WSG-0826-SM-5EQ5A 60.1
GTEX-ZYT6-2226-SM-5GIC9 59.2
GTEX-1399S-0526-SM-5IJG8 58.1
GTEX-P4QS-1126-SM-3NMD5 57.1
GTEX-1497J-0826-SM-5NQAJ 55.0
GTEX-ZVZP-0926-SM-5GIDB 54.5
GTEX-ZLFU-0926-SM-5P9F8 52.9
GTEX-11TTK-1926-SM-5PNW8 52.9
GTEX-13OVI-1126-SM-5KLZF 52.8
GTEX-13NYB-1726-SM-5N9G2 52.1
GTEX-Y5V6-2026-SM-5IFHO 52.0
GTEX-N7MS-1626-SM-3LK5F 48.4
GTEX-RN64-1626-SM-48FD7 47.8
GTEX-147F4-2626-SM-5Q5CS 47.4
GTEX-13O1R-2526-SM-5N9FW 47.0
GTEX-13112-2126-SM-5GCO4 46.8
GTEX-13OVL-1826-SM-5KLZR 43.4
GTEX-13RTJ-2226-SM-5S2Q1 41.6
GTEX-11GS4-2326-SM-5A5KS 40.5
GTEX-T5JC-1526-SM-4DM68 39.8
GTEX-ZC5H-1726-SM-5HL7X 36.4
GTEX-11OF3-1326-SM-5N9FJ 34.0
GTEX-13OW6-1826-SM-5N9F9 28.6
GTEX-ZYFD-1526-SM-5NQ7T 24.5
GTEX-NPJ8-2226-SM-3TW8D 19.3
Show all

KIDNEY - FANTOM5 CAGE

Average Tags Per Million

186.2

FANTOM5 sample id

Sample description

Tags Per Million

Kidney
Tags Per Million: 186.2
FF:10017-101C8 60,62,63 years, female 186.2

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