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Term
Gene name

Class

Subclass

Chromosome

External id

In atlas

Reliability

Reliability

Reliability

Validation

Method

Validation

Method

Validation

Method

Validation

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Searches

Tissue

Cell type

Expression

Tissue

Specificity

Cell line

Specificity

Tissue

Detectable

Cell line

Detectable

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Score

Score

Score

Antibodies

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TOP2A
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TISSUE ATLAS PRIMARY DATA

GENE/PROTEIN

Antibody validation


Dictionary


Tissue proteome

GENERAL INFORMATION

Gene name

TOP2A

Gene description

Topoisomerase (DNA) II alpha

Protein class

Cancer-related genes
Enzymes
FDA approved drug targets
Plasma proteins
Predicted intracellular proteins

Predicted localization

Intracellular

Number of transcripts

3
SHOW MORE

HUMAN PROTEIN ATLAS INFORMATION

RNA tissue category

HPA:Tissue enhanced (testis)
GTEx:Tissue enhanced (testis)
FANTOM5:Tissue enhanced (testis, appendix)

Protein evidence

Evidence at protein level

Protein expression

Nuclear expression mainly observed in highly proliferative cells.

DATA RELIABILITY

Data reliability
description

Antibody staining mainly consistent with RNA expression data.

Reliability score

Supported based on 3 antibodies.
HPA006458 , HPA026773 , CAB002448
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RNA AND PROTEIN EXPRESSION SUMMARY

RNA expression (TPM) Protein expression (score)
Brain
Cerebral cortex
Hippocampus
N/A
Caudate
N/A
Cerebellum
N/A
Endocrine tissues
Thyroid gland
Parathyroid gland
Adrenal gland
Bone marrow & immune system
Appendix
Bone marrow
Lymph node
Tonsil
Spleen
Muscle tissues
Heart muscle
Skeletal muscle
Smooth muscle
Lung
Nasopharynx
N/A
Bronchus
N/A
Lung
Liver & gallbladder
Liver
Gallbladder
Pancreas
Pancreas
Gastrointestinal tract
Oral mucosa
N/A
Salivary gland
Esophagus
Stomach
Duodenum
Small intestine
Colon
Rectum
Kidney & urinary bladder
Kidney
Urinary bladder
Male tissues
Testis
Epididymis
Prostate
Seminal vesicle
Female tissues
Breast
Vagina
N/A
Cervix, uterine
Endometrium
Fallopian tube
Ovary
Placenta
Adipose & soft tissue
Adipose tissue
Soft tissue
N/A
Skin
Skin
Cerebral cortex

Lymph node

Liver

Esophagus

Colon

Kidney

Testis

PROTEIN EXPRESSION OVERVIEW

Organ
Expression
Alphabetical

RNA EXPRESSION OVERVIEW

HPA dataset
Organ
Expression
Alphabetical
RNA tissue category: Tissue enhanced (testis)
GTEx dataset
Organ
Expression
Alphabetical
RNA tissue category: Tissue enhanced (testis)
FANTOM5 dataset
Organ
Expression
Alphabetical
RNA tissue category: Tissue enhanced (testis, appendix)

GENE INFORMATION

Gene name

TOP2A (HGNC Symbol)

Synonyms

TOP2

Description

Topoisomerase (DNA) II alpha (HGNC Symbol)

Entrez gene summary

This gene encodes a DNA topoisomerase, an enzyme that controls and alters the topologic states of DNA during transcription. This nuclear enzyme is involved in processes such as chromosome condensation, chromatid separation, and the relief of torsional stress that occurs during DNA transcription and replication. It catalyzes the transient breaking and rejoining of two strands of duplex DNA which allows the strands to pass through one another, thus altering the topology of DNA. Two forms of this enzyme exist as likely products of a gene duplication event. The gene encoding this form, alpha, is localized to chromosome 17 and the beta gene is localized to chromosome 3. The gene encoding this enzyme functions as the target for several anticancer agents and a variety of mutations in this gene have been associated with the development of drug resistance. Reduced activity of this enzyme may also play a role in ataxia-telangiectasia. [provided by RefSeq, Jul 2010]

Chromosome

17

Cytoband

q21.2

Chromosome location (bp)

40388516 - 40417950

Protein evidence

Evidence at protein level (all genes)

Ensembl

ENSG00000131747 (version 83.38)

Entrez gene

7153

UniProt

P11388 (UniProt - Evidence at protein level)

neXtProt

NX_P11388

Antibodypedia

TOP2A antibodies

PROTEIN BROWSER

TOP2A-001
TOP2A-003
TOP2A-006

PROTEIN INFORMATION

Splice variant

UniProt

Protein class

Gene ontology

Length & mass

Signal peptide
(predicted)

Transmembrane regions
(predicted)

TOP2A-001
ENSP00000411532
ENST00000423485
P11388 [Direct mapping]
DNA topoisomerase 2-alpha
Show all
Enzymes
   ENZYME proteins
   Isomerase
Predicted intracellular proteins
Plasma proteins
Cancer-related genes
   Candidate cancer biomarkers
FDA approved drug targets
   Small molecule drugs
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0000228 [nuclear chromosome]
GO:0000278 [mitotic cell cycle]
GO:0000287 [magnesium ion binding]
GO:0000712 [resolution of meiotic recombination intermediates]
GO:0000793 [condensed chromosome]
GO:0000819 [sister chromatid segregation]
GO:0002244 [hematopoietic progenitor cell differentiation]
GO:0003677 [DNA binding]
GO:0003682 [chromatin binding]
GO:0003918 [DNA topoisomerase type II (ATP-hydrolyzing) activity]
GO:0005080 [protein kinase C binding]
GO:0005515 [protein binding]
GO:0005524 [ATP binding]
GO:0005634 [nucleus]
GO:0005654 [nucleoplasm]
GO:0005730 [nucleolus]
GO:0005814 [centriole]
GO:0006265 [DNA topological change]
GO:0006266 [DNA ligation]
GO:0006268 [DNA unwinding involved in DNA replication]
GO:0006974 [cellular response to DNA damage stimulus]
GO:0007059 [chromosome segregation]
GO:0008022 [protein C-terminus binding]
GO:0008094 [DNA-dependent ATPase activity]
GO:0008144 [drug binding]
GO:0008301 [DNA binding, bending]
GO:0009330 [DNA topoisomerase complex (ATP-hydrolyzing)]
GO:0019035 [viral integration complex]
GO:0019899 [enzyme binding]
GO:0030261 [chromosome condensation]
GO:0030263 [apoptotic chromosome condensation]
GO:0040016 [embryonic cleavage]
GO:0042752 [regulation of circadian rhythm]
GO:0042803 [protein homodimerization activity]
GO:0042826 [histone deacetylase binding]
GO:0043065 [positive regulation of apoptotic process]
GO:0043130 [ubiquitin binding]
GO:0043234 [protein complex]
GO:0044774 [mitotic DNA integrity checkpoint]
GO:0044822 [poly(A) RNA binding]
GO:0045070 [positive regulation of viral genome replication]
GO:0045870 [positive regulation of single stranded viral RNA replication via double stranded DNA intermediate]
GO:0045944 [positive regulation of transcription from RNA polymerase II promoter]
GO:0046982 [protein heterodimerization activity]
GO:0048511 [rhythmic process]
Show all
1531 aa
174.4 kDa
No 0
TOP2A-003
ENSP00000462908
ENST00000581055
J3KTB7 [Direct mapping]
DNA topoisomerase 2-alpha
Show all
Predicted intracellular proteins
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0000712 [resolution of meiotic recombination intermediates]
GO:0000819 [sister chromatid segregation]
GO:0003677 [DNA binding]
GO:0003918 [DNA topoisomerase type II (ATP-hydrolyzing) activity]
GO:0005524 [ATP binding]
GO:0006265 [DNA topological change]
GO:0006268 [DNA unwinding involved in DNA replication]
GO:0044774 [mitotic DNA integrity checkpoint]
Show all
147 aa
17.1 kDa
No 0
TOP2A-006
ENSP00000464055
ENST00000577541
J3QR57 [Direct mapping]
DNA topoisomerase 2-alpha
Show all
Predicted intracellular proteins
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0000712 [resolution of meiotic recombination intermediates]
GO:0000819 [sister chromatid segregation]
GO:0003677 [DNA binding]
GO:0003918 [DNA topoisomerase type II (ATP-hydrolyzing) activity]
GO:0005524 [ATP binding]
GO:0005634 [nucleus]
GO:0006268 [DNA unwinding involved in DNA replication]
GO:0044774 [mitotic DNA integrity checkpoint]
Show all
27 aa
3.1 kDa
No 0

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