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Field

Term
Gene name

Class

Subclass

Chromosome

External id

In atlas

Reliability

Reliability

Reliability

Validation

Method

Validation

Method

Validation

Method

Validation

Location

Searches

Tissue

Cell type

Expression

Tissue

Specificity

Cell line

Specificity

Tissue

Detectable

Cell line

Detectable

Category

Score

Score

Score

Antibodies

Column

 
 
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SS18
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    TISSUE

  • CELL

  • CANCER

TISSUE ATLAS PRIMARY DATA

GENE/PROTEIN

Antibody validation


Dictionary


Tissue proteome

GENERAL INFORMATION

Gene name

SS18

Gene description

Synovial sarcoma translocation, chromosome 18

Protein class

Cancer-related genes
Disease related genes
Predicted intracellular proteins

Predicted localization

Intracellular

Number of transcripts

6
SHOW MORE

HUMAN PROTEIN ATLAS INFORMATION

RNA tissue category

HPA:Expressed in all
GTEx:Expressed in all
FANTOM5:Expressed in all

Protein evidence

Evidence at protein level

Protein expression

General nuclear expression.

DATA RELIABILITY

Data reliability
description

Antibody staining mainly consistent with RNA expression data.

Reliability score

Supported based on 2 antibodies.
HPA055741 , HPA059539
SHOW MORE

RNA AND PROTEIN EXPRESSION SUMMARY

RNA expression (TPM) Protein expression (score)
Brain
Cerebral cortex
Hippocampus
N/A
Caudate
N/A
Cerebellum
N/A
Endocrine tissues
Thyroid gland
Parathyroid gland
Adrenal gland
Bone marrow & immune system
Appendix
Bone marrow
Lymph node
Tonsil
Spleen
Muscle tissues
Heart muscle
Skeletal muscle
Smooth muscle
Lung
Nasopharynx
N/A
Bronchus
N/A
Lung
Liver & gallbladder
Liver
Gallbladder
Pancreas
Pancreas
Gastrointestinal tract
Oral mucosa
N/A
Salivary gland
Esophagus
Stomach
Duodenum
Small intestine
Colon
Rectum
Kidney & urinary bladder
Kidney
Urinary bladder
Male tissues
Testis
Epididymis
Prostate
Seminal vesicle
Female tissues
Breast
Vagina
N/A
Cervix, uterine
Endometrium
Fallopian tube
Ovary
Placenta
Adipose & soft tissue
Adipose tissue
Soft tissue
N/A
Skin
Skin
Cerebral cortex

Lymph node

Liver

Colon

Kidney

Testis

PROTEIN EXPRESSION OVERVIEW

Organ
Expression
Alphabetical

RNA EXPRESSION OVERVIEW

HPA dataset
Organ
Expression
Alphabetical
RNA tissue category: Expressed in all
GTEx dataset
Organ
Expression
Alphabetical
RNA tissue category: Expressed in all
FANTOM5 dataset
Organ
Expression
Alphabetical
RNA tissue category: Expressed in all

GENE INFORMATION

Gene name

SS18 (HGNC Symbol)

Synonyms

SSXT, SYT

Description

Synovial sarcoma translocation, chromosome 18 (HGNC Symbol)

Entrez gene summary

Chromosome

18

Cytoband

q11.2

Chromosome location (bp)

26016253 - 26091217

Protein evidence

Evidence at protein level (all genes)

Ensembl

ENSG00000141380 (version 83.38)

Entrez gene

6760

UniProt

Q15532 (UniProt - Evidence at protein level)

neXtProt

NX_Q15532

Antibodypedia

SS18 antibodies

PROTEIN BROWSER

SS18-001
SS18-002
SS18-003
SS18-022
SS18-023
SS18-024

PROTEIN INFORMATION

Splice variant

UniProt

Protein class

Gene ontology

Length & mass

Signal peptide
(predicted)

Transmembrane regions
(predicted)

SS18-001
ENSP00000269137
ENST00000269137
Q15532 [Direct mapping]
Protein SSXT
Q4VAX0 [Target identity:100%; Query identity:100%]
Synovial sarcoma translocation, chromosome 18; Synovial sarcoma translocation, chromosome 18, isoform CRA_a; cDNA FLJ57021, highly similar to SSXT protein; cDNA, FLJ79201, highly similar to SSXT protein
Show all
Predicted intracellular proteins
Cancer-related genes
   COSMIC somatic mutations in cancer genes
   COSMIC Somatic Mutations
   COSMIC Translocations
Disease related genes
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005515 [protein binding]
GO:0005634 [nucleus]
GO:0006351 [transcription, DNA-templated]
GO:0030374 [ligand-dependent nuclear receptor transcription coactivator activity]
GO:0045944 [positive regulation of transcription from RNA polymerase II promoter]
Show all
387 aa
42.2 kDa
No 0
SS18-002
ENSP00000438066
ENST00000542420
B4DLD3 [Direct mapping]
Protein SSXT; cDNA FLJ58120, highly similar to SSXT protein
Show all
Predicted intracellular proteins
Cancer-related genes
   COSMIC somatic mutations in cancer genes
   COSMIC Somatic Mutations
   COSMIC Translocations
Protein evidence (Ezkurdia et al 2014)
Show all
395 aa
43.5 kDa
No 0
SS18-003
ENSP00000414516
ENST00000415083
Q15532 [Direct mapping]
Protein SSXT
A0A024RC40 [Target identity:100%; Query identity:100%]
Synovial sarcoma translocation, chromosome 18, isoform CRA_b
Show all
Predicted intracellular proteins
Cancer-related genes
   COSMIC somatic mutations in cancer genes
   COSMIC Somatic Mutations
   COSMIC Translocations
Disease related genes
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0000226 [microtubule cytoskeleton organization]
GO:0000902 [cell morphogenesis]
GO:0005515 [protein binding]
GO:0005634 [nucleus]
GO:0005881 [cytoplasmic microtubule]
GO:0006351 [transcription, DNA-templated]
GO:0007010 [cytoskeleton organization]
GO:0030374 [ligand-dependent nuclear receptor transcription coactivator activity]
GO:0035556 [intracellular signal transduction]
GO:0042493 [response to drug]
GO:0045944 [positive regulation of transcription from RNA polymerase II promoter]
GO:0048013 [ephrin receptor signaling pathway]
GO:0071564 [npBAF complex]
GO:0097150 [neuronal stem cell population maintenance]
Show all
418 aa
45.9 kDa
No 0
SS18-022
ENSP00000463586
ENST00000581021
J3QLJ7 [Direct mapping]
Protein SSXT
Show all
Predicted intracellular proteins
Cancer-related genes
   COSMIC somatic mutations in cancer genes
   COSMIC Somatic Mutations
   COSMIC Translocations
Protein evidence (Ezkurdia et al 2014)
Show all
70 aa
7.7 kDa
No 0
SS18-023
ENSP00000463943
ENST00000584083
J3QQX5 [Direct mapping]
Protein SSXT
Show all
Predicted intracellular proteins
Cancer-related genes
   COSMIC somatic mutations in cancer genes
   COSMIC Somatic Mutations
   COSMIC Translocations
Protein evidence (Ezkurdia et al 2014)
Show all
130 aa
14 kDa
No 0
SS18-024
ENSP00000462766
ENST00000579061
J3KT22 [Direct mapping]
Protein SSXT
Show all
Predicted intracellular proteins
Cancer-related genes
   COSMIC somatic mutations in cancer genes
   COSMIC Somatic Mutations
   COSMIC Translocations
Protein evidence (Ezkurdia et al 2014)
Show all
152 aa
16.2 kDa
No 0

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