We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
Fields »
 

Field

Term
Gene name

Class

Subclass

Chromosome

External id

In atlas

Reliability

Reliability

Reliability

Validation

Method

Validation

Method

Validation

Method

Validation

Location

Searches

Tissue

Cell type

Expression

Tissue

Specificity

Cell line

Specificity

Tissue

Detectable

Cell line

Detectable

Category

Score

Score

Score

Antibodies

Column

 
 
ABOUT
HELP
BLOG
  • THE HUMAN PROTEOME
  • THE HUMAN TISSUES
  • THE HUMAN CELL
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
    • NEWS
    • BLOG
    • EVENTS
    • PRESS ROOM
    • LEARN
    • DICTIONARY
    • METHODS
    • CELL LINES
  • THE PROJECT
  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS
  • PUBLICATION DATA
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • LINKS
  • CONTACT
  • TECHNICAL DATA
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • DOWNLOADABLE DATA
  • HELP & FAQ
  • LICENCE & CITATION
  • PRIVACY STATEMENT
  • RELEASE HISTORY
PNMT
  • TISSUE

  • CELL

  • CANCER

TISSUE ATLAS PRIMARY DATA CAUDATE

GENE/PROTEIN

Antibody validation


Dictionary

Caudate

CAUDATE - Expression summary

Protein expression

h
m
l
n

RNA expression

GTEx:18.0RPKM
FANTOM5:30.1Tags Per Million

CAUDATE - Annotated protein expression

Annotated protein
expression

Glial cells:Not detected
Neuronal cells:Not detected
 

Antibody staining

Antibody HPA043412

 

Antibody HPA051005

 

Antibody CAB017029

 

Glial cells

Not detected   Not detected   Not detected  

Neuronal cells

Not detected   Not detected   Not detected  
     
     
     

CAUDATE - HPA RNA-seq

Pending HPA RNA-seq analysis


CAUDATE - GTEx RNA-seq

Average RPKM

18.0

GTEx sample id

RPKM

 

Brain - Caudate (basal ganglia)

Brain - Caudate (basal ganglia)
RPKM: 18.0
Samples: 117

Max RPKM: 46.6
Min RPKM: 5.1
Std RPKM: 8.2
Median RPKM: 16.4
GTEX-13CZV-0011-R5a-SM-5K7XA 46.6
GTEX-144GO-0011-R5a-SM-5PNUR 43.5
GTEX-12WSM-0011-R5a-SM-5EQ4Y 42.2
GTEX-12ZZW-0011-R5a-SM-5DUVN 41.2
GTEX-TSE9-0011-R5A-SM-3DB7J 36.8
GTEX-12WSA-0011-R5b-SM-5GU5I 35.2
GTEX-XMD1-0011-R5A-SM-4AT47 34.1
GTEX-14BIM-0011-R5b-SM-5S2RM 30.9
GTEX-13RTJ-0011-R5a-SM-5P9HR 30.4
GTEX-T6MN-0011-R5A-SM-32QPD 30.1
GTEX-ZUA1-0011-R5b-SM-51MTG 29.6
GTEX-132Q8-0011-R5a-SM-5IJDM 29.4
GTEX-13OVJ-0011-R5a-SM-5P9H7 29.1
GTEX-13O3Q-0011-R5b-SM-5P9H4 27.2
GTEX-11H98-0011-R5b-SM-57WCF 26.8
GTEX-Q2AG-0011-R5A-SM-2HMJH 26.5
GTEX-X261-0011-R5A-SM-3NMB4 26.4
GTEX-13OVH-0011-R5b-SM-5KM4L 26.2
GTEX-12WSC-0011-R5b-SM-5CVNS 25.3
GTEX-13G51-0011-R5a-SM-5L3EB 24.9
GTEX-13CIG-0011-R5b-SM-5L3F2 24.4
GTEX-13S7M-0011-R5b-SM-5P9HS 24.2
GTEX-12ZZY-0011-R5a-SM-5EGL9 24.0
GTEX-1445S-0011-R5a-SM-5PNUS 23.8
GTEX-13FLW-0011-R5a-SM-5LZX6 23.1
GTEX-13X6I-0011-R5a-SM-5PNWW 23.1
GTEX-ZAB4-0011-R5a-SM-4SOKC 22.9
GTEX-RVPU-0011-R5A-SM-2XCAD 22.7
GTEX-ZE9C-0011-R5a-SM-5EGLO 22.4
GTEX-RU72-0011-R5A-SM-2TF6U 22.3
GTEX-T5JC-0011-R5A-SM-32PLK 21.4
GTEX-13JUV-0011-R5a-SM-5LZY5 20.9
GTEX-NPJ8-0011-R5a-SM-2HMJY 20.9
GTEX-13JVG-0011-R5a-SM-5MR4O 20.8
GTEX-11OF3-0011-R5a-SM-57WB4 20.0
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 19.9
GTEX-13N1W-0011-R5b-SM-5MR5Q 19.9
GTEX-131YS-0011-R5b-SM-5K7YB 19.8
GTEX-11GSP-0011-R5a-SM-57WBE 19.6
GTEX-ZF28-0011-R5a-SM-4WWCZ 19.6
GTEX-ZXG5-0011-R5b-SM-57WBN 19.5
GTEX-R55E-0011-R5A-SM-2TC5N 19.2
GTEX-13SLW-0011-R5b-SM-5SI6Z 19.1
GTEX-X585-0011-R5A-SM-46MVI 19.0
GTEX-13VXU-0011-R5a-SM-5O9D7 18.7
GTEX-13OW5-0011-R5b-SM-5L3FR 18.6
GTEX-13NYS-0011-R5a-SM-5MR4D 18.4
GTEX-N7MT-0011-R5a-SM-2I3G6 18.4
GTEX-ZVT3-0011-R5a-SM-51MSI 18.2
GTEX-13FLV-0011-R5a-SM-5LZWT 18.0
GTEX-14ABY-0011-R5b-SM-5SI7B 17.5
GTEX-1313W-0011-R5b-SM-5L3EP 17.3
GTEX-1399T-0011-R5b-SM-5IJDK 17.2
GTEX-Y8DK-0011-R5B-SM-4RTW6 17.0
GTEX-X4XX-0011-R5A-SM-46MWN 16.9
GTEX-13X6J-0011-R5b-SM-5PNWT 16.8
GTEX-13OVL-0011-R5b-SM-5L3FU 16.7
GTEX-145MH-0011-R5a-SM-5P9JT 16.7
GTEX-WVLH-0011-R5A-SM-3MJFW 16.4
GTEX-12WSB-0011-R5b-SM-5GU67 16.1
GTEX-WHSE-0011-R5A-SM-3P5ZO 16.0
GTEX-139T8-0011-R5b-SM-5J1MO 15.8
GTEX-RVPV-0011-R5A-SM-2TF69 15.8
GTEX-13NYB-0011-R5a-SM-5MR45 15.7
GTEX-14BIN-0011-R5b-SM-5SI78 15.6
GTEX-N7MS-0011-R5a-SM-2HMK8 15.5
GTEX-12WSD-0011-R5b-SM-5CVNG 15.3
GTEX-13OW6-0011-R5a-SM-5O9BK 15.3
GTEX-UTHO-0011-R5A-SM-3GIJD 15.2
GTEX-ZV68-0011-R5a-SM-4YCDW 14.5
GTEX-XOTO-0011-R5A-SM-4B657 14.4
GTEX-YJ89-0011-R5a-SM-4V6GM 14.4
GTEX-13FXS-0011-R5b-SM-5LZYE 14.3
GTEX-13SLX-0011-R5a-SM-5O9BV 14.2
GTEX-11NV4-0011-R5a-SM-5NQ88 14.1
GTEX-OHPN-0011-R5A-SM-2I5FF 14.1
GTEX-145LS-0011-R5a-SM-5SI65 13.7
GTEX-S7PM-0011-R5A-SM-3NM8G 13.7
GTEX-11WQC-0011-R5a-SM-5BC74 13.6
GTEX-1477Z-0011-R5b-SM-5PNUO 13.6
GTEX-12ZZX-0011-R5a-SM-5HL89 13.4
GTEX-13FHO-0011-R5b-SM-5LZZ3 13.3
GTEX-ZE7O-0011-R5a-SM-57WBO 13.2
GTEX-12WSF-0011-R5a-SM-5HL8K 13.1
GTEX-13O3O-0011-R5b-SM-5KM44 13.1
GTEX-P44H-0011-R5A-SM-2XCEX 13.0
GTEX-139TT-0011-R5b-SM-5K7W8 12.9
GTEX-NL4W-0011-R5a-SM-2I3GD 12.8
GTEX-13OW8-0011-R5b-SM-5L3FQ 12.5
GTEX-WZTO-0011-R5B-SM-3NMC5 12.5
GTEX-13OW7-0011-R5b-SM-5O9DM 12.4
GTEX-S7SE-0011-R5A-SM-2XCDA 12.3
GTEX-Z93S-0011-R5b-SM-4RGNI 12.1
GTEX-13X6K-0011-R5b-SM-5PNUE 12.0
GTEX-13NZA-0011-R5b-SM-5KM4K 11.8
GTEX-WL46-0011-R5A-SM-3LK6V 11.6
GTEX-13FHP-0011-R5b-SM-5LZY2 11.5
GTEX-QVJO-0011-R5A-SM-2S1QM 11.4
GTEX-13PLJ-0011-R5a-SM-5O9BG 11.3
GTEX-WWYW-0011-R5A-SM-3NB3E 11.0
GTEX-ZVZQ-0011-R5b-SM-57WDC 10.9
GTEX-13PVQ-0011-R5b-SM-5O9DI 10.3
GTEX-11UD1-0011-R5b-SM-5P9FP 8.9
GTEX-OXRN-0011-R5A-SM-2I5EF 8.7
GTEX-13112-0011-R5b-SM-5DUV8 8.5
GTEX-12WSH-0011-R5b-SM-5P9F3 8.0
GTEX-145MG-0011-R5b-SM-5S2VU 8.0
GTEX-QMR6-0011-R5A-SM-32PKT 7.5
GTEX-PVOW-0011-R5A-SM-32PL7 7.3
GTEX-PWO3-0011-R5A-SM-2I5EZ 7.3
GTEX-T2IS-0011-R5A-SM-32QP4 7.3
GTEX-139TS-0011-R5b-SM-5J2MZ 7.1
GTEX-NL3H-0011-R5a-SM-2I3GB 6.9
GTEX-13CF2-0011-R5a-SM-5LZWS 6.8
GTEX-144GL-0011-R5b-SM-5PNUJ 5.8
GTEX-NPJ7-0011-R5a-SM-33HBK 5.6
GTEX-YFC4-0011-R5a-SM-4RGLR 5.1
Show all

CAUDATE - FANTOM5 CAGE

Average Tags Per Million

30.1

FANTOM5 sample id

Sample description

Tags Per Million

Caudate nucleus
Tags Per Million: 30.1
FF:10379-105H1 89 years, female 33.6
FF:10164-103B2 76 years, female 26.7

Contact

  • BLOG
  • PRESS ROOM
  • contact@proteinatlas.org

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS
  • DOWNLOADABLE DATA

The Human Protein Atlas

  • ANTIBODY AVAILABILITY
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.