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TISSUE ATLAS PRIMARY DATA CAUDATE

GENE/PROTEIN

Antibody validation


Dictionary

Caudate

CAUDATE - Expression summary

Protein expression

h
m
l
n

RNA expression

GTEx:65.2RPKM
FANTOM5:128.3Tags Per Million

CAUDATE - Annotated protein expression

Annotated protein
expression

Glial cells:Low
Neuronal cells:Low
 

Antibody staining

Antibody HPA001523

 

Antibody CAB002775

 

Antibody CAB072816

 

Glial cells

Medium   Low   Medium  

Neuronal cells

Medium   Low   Medium  
     
     
     

CAUDATE - HPA RNA-seq

Pending HPA RNA-seq analysis


CAUDATE - GTEx RNA-seq

Average RPKM

65.2

GTEx sample id

RPKM

 

Brain - Caudate (basal ganglia)

Brain - Caudate (basal ganglia)
RPKM: 65.2
Samples: 117

Max RPKM: 250.9
Min RPKM: 26.3
Std RPKM: 34.2
Median RPKM: 57.7
GTEX-13OVJ-0011-R5a-SM-5P9H7 250.9
GTEX-13N1W-0011-R5b-SM-5MR5Q 211.0
GTEX-WWYW-0011-R5A-SM-3NB3E 172.0
GTEX-13PVQ-0011-R5b-SM-5O9DI 159.3
GTEX-13JVG-0011-R5a-SM-5MR4O 146.4
GTEX-TSE9-0011-R5A-SM-3DB7J 142.2
GTEX-NL3H-0011-R5a-SM-2I3GB 139.6
GTEX-11GSP-0011-R5a-SM-57WBE 132.0
GTEX-NPJ8-0011-R5a-SM-2HMJY 124.9
GTEX-13NYS-0011-R5a-SM-5MR4D 121.4
GTEX-13FLV-0011-R5a-SM-5LZWT 105.4
GTEX-XMD1-0011-R5A-SM-4AT47 97.9
GTEX-OXRN-0011-R5A-SM-2I5EF 95.9
GTEX-WHSE-0011-R5A-SM-3P5ZO 91.6
GTEX-13SLX-0011-R5a-SM-5O9BV 90.8
GTEX-12WSH-0011-R5b-SM-5P9F3 84.8
GTEX-T2IS-0011-R5A-SM-32QP4 82.8
GTEX-X261-0011-R5A-SM-3NMB4 79.1
GTEX-ZV68-0011-R5a-SM-4YCDW 79.0
GTEX-PWO3-0011-R5A-SM-2I5EZ 73.2
GTEX-13CIG-0011-R5b-SM-5L3F2 72.3
GTEX-12WSB-0011-R5b-SM-5GU67 72.1
GTEX-139T8-0011-R5b-SM-5J1MO 72.1
GTEX-PVOW-0011-R5A-SM-32PL7 71.4
GTEX-X4XX-0011-R5A-SM-46MWN 70.9
GTEX-NL4W-0011-R5a-SM-2I3GD 69.5
GTEX-P44H-0011-R5A-SM-2XCEX 68.4
GTEX-NPJ7-0011-R5a-SM-33HBK 68.0
GTEX-T6MN-0011-R5A-SM-32QPD 67.5
GTEX-13JUV-0011-R5a-SM-5LZY5 67.3
GTEX-UTHO-0011-R5A-SM-3GIJD 66.2
GTEX-QVJO-0011-R5A-SM-2S1QM 65.5
GTEX-13OW6-0011-R5a-SM-5O9BK 64.8
GTEX-ZE9C-0011-R5a-SM-5EGLO 63.6
GTEX-ZF28-0011-R5a-SM-4WWCZ 63.4
GTEX-12WSA-0011-R5b-SM-5GU5I 63.3
GTEX-13X6K-0011-R5b-SM-5PNUE 63.2
GTEX-132Q8-0011-R5a-SM-5IJDM 62.8
GTEX-N7MT-0011-R5a-SM-2I3G6 62.8
GTEX-12WSF-0011-R5a-SM-5HL8K 62.6
GTEX-13RTJ-0011-R5a-SM-5P9HR 62.3
GTEX-13FHO-0011-R5b-SM-5LZZ3 61.6
GTEX-145LS-0011-R5a-SM-5SI65 61.6
GTEX-144GO-0011-R5a-SM-5PNUR 61.5
GTEX-131YS-0011-R5b-SM-5K7YB 61.4
GTEX-WVLH-0011-R5A-SM-3MJFW 61.4
GTEX-RU72-0011-R5A-SM-2TF6U 61.1
GTEX-ZAB4-0011-R5a-SM-4SOKC 60.9
GTEX-13G51-0011-R5a-SM-5L3EB 60.8
GTEX-T5JC-0011-R5A-SM-32PLK 60.7
GTEX-Y8DK-0011-R5B-SM-4RTW6 60.4
GTEX-139TT-0011-R5b-SM-5K7W8 60.1
GTEX-Q2AG-0011-R5A-SM-2HMJH 59.9
GTEX-13X6I-0011-R5a-SM-5PNWW 59.3
GTEX-12WSC-0011-R5b-SM-5CVNS 59.1
GTEX-13SLW-0011-R5b-SM-5SI6Z 58.4
GTEX-S7SE-0011-R5A-SM-2XCDA 58.4
GTEX-X585-0011-R5A-SM-46MVI 57.8
GTEX-13OW7-0011-R5b-SM-5O9DM 57.7
GTEX-11OF3-0011-R5a-SM-57WB4 57.3
GTEX-12WSM-0011-R5a-SM-5EQ4Y 57.3
GTEX-11H98-0011-R5b-SM-57WCF 57.0
GTEX-139TS-0011-R5b-SM-5J2MZ 56.0
GTEX-14BIM-0011-R5b-SM-5S2RM 56.0
GTEX-YFC4-0011-R5a-SM-4RGLR 55.7
GTEX-N7MS-0011-R5a-SM-2HMK8 55.2
GTEX-R55E-0011-R5A-SM-2TC5N 55.2
GTEX-ZE7O-0011-R5a-SM-57WBO 55.1
GTEX-ZVZQ-0011-R5b-SM-57WDC 54.8
GTEX-1445S-0011-R5a-SM-5PNUS 54.6
GTEX-WZTO-0011-R5B-SM-3NMC5 54.1
GTEX-1399T-0011-R5b-SM-5IJDK 53.7
GTEX-13O3Q-0011-R5b-SM-5P9H4 53.3
GTEX-12ZZY-0011-R5a-SM-5EGL9 52.9
GTEX-1313W-0011-R5b-SM-5L3EP 52.8
GTEX-ZUA1-0011-R5b-SM-51MTG 52.1
GTEX-13OW5-0011-R5b-SM-5L3FR 51.8
GTEX-13NYB-0011-R5a-SM-5MR45 51.6
GTEX-11WQC-0011-R5a-SM-5BC74 51.4
GTEX-13CZV-0011-R5a-SM-5K7XA 50.3
GTEX-12ZZX-0011-R5a-SM-5HL89 49.4
GTEX-QMR6-0011-R5A-SM-32PKT 49.3
GTEX-ZXG5-0011-R5b-SM-57WBN 49.0
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 48.0
GTEX-13OVH-0011-R5b-SM-5KM4L 48.0
GTEX-13OW8-0011-R5b-SM-5L3FQ 47.9
GTEX-13VXU-0011-R5a-SM-5O9D7 47.6
GTEX-13OVL-0011-R5b-SM-5L3FU 47.3
GTEX-13X6J-0011-R5b-SM-5PNWT 46.6
GTEX-WL46-0011-R5A-SM-3LK6V 45.8
GTEX-13FXS-0011-R5b-SM-5LZYE 45.5
GTEX-13PLJ-0011-R5a-SM-5O9BG 45.5
GTEX-12ZZW-0011-R5a-SM-5DUVN 45.4
GTEX-145MH-0011-R5a-SM-5P9JT 45.2
GTEX-12WSD-0011-R5b-SM-5CVNG 44.9
GTEX-14ABY-0011-R5b-SM-5SI7B 43.7
GTEX-XOTO-0011-R5A-SM-4B657 43.0
GTEX-OHPN-0011-R5A-SM-2I5FF 42.7
GTEX-13O3O-0011-R5b-SM-5KM44 42.6
GTEX-13FLW-0011-R5a-SM-5LZX6 42.5
GTEX-S7PM-0011-R5A-SM-3NM8G 42.3
GTEX-11NV4-0011-R5a-SM-5NQ88 40.3
GTEX-RVPV-0011-R5A-SM-2TF69 40.2
GTEX-Z93S-0011-R5b-SM-4RGNI 39.9
GTEX-14BIN-0011-R5b-SM-5SI78 39.4
GTEX-11UD1-0011-R5b-SM-5P9FP 39.1
GTEX-ZVT3-0011-R5a-SM-51MSI 39.1
GTEX-13112-0011-R5b-SM-5DUV8 38.8
GTEX-RVPU-0011-R5A-SM-2XCAD 38.3
GTEX-13S7M-0011-R5b-SM-5P9HS 36.6
GTEX-144GL-0011-R5b-SM-5PNUJ 35.5
GTEX-YJ89-0011-R5a-SM-4V6GM 34.4
GTEX-13FHP-0011-R5b-SM-5LZY2 32.8
GTEX-13CF2-0011-R5a-SM-5LZWS 30.7
GTEX-145MG-0011-R5b-SM-5S2VU 28.3
GTEX-1477Z-0011-R5b-SM-5PNUO 27.7
GTEX-13NZA-0011-R5b-SM-5KM4K 26.3
Show all

CAUDATE - FANTOM5 CAGE

Average Tags Per Million

128.3

FANTOM5 sample id

Sample description

Tags Per Million

Caudate nucleus
Tags Per Million: 128.3
FF:10164-103B2 76 years, female 166.4
FF:10379-105H1 89 years, female 90.1

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