We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
Fields »
 

Field

Term
Gene name

Class

Subclass

Chromosome

External id

In atlas

Reliability

Reliability

Reliability

Validation

Method

Validation

Method

Validation

Method

Validation

Location

Searches

Tissue

Cell type

Expression

Tissue

Specificity

Cell line

Specificity

Tissue

Detectable

Cell line

Detectable

Category

Score

Score

Score

Antibodies

Column

 
 
ABOUT
HELP
BLOG
  • THE HUMAN PROTEOME
  • THE HUMAN TISSUES
  • THE HUMAN CELL
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
    • NEWS
    • BLOG
    • EVENTS
    • PRESS ROOM
    • LEARN
    • DICTIONARY
    • METHODS
    • CELL LINES
  • THE PROJECT
  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS
  • PUBLICATION DATA
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • LINKS
  • CONTACT
  • TECHNICAL DATA
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • DOWNLOADABLE DATA
  • HELP & FAQ
  • LICENCE & CITATION
  • PRIVACY STATEMENT
  • RELEASE HISTORY
CDH2
  • premium

    TISSUE

  • premium

    CELL

  • CANCER

TISSUE ATLAS PRIMARY DATA CAUDATE

GENE/PROTEIN

Antibody validation


Dictionary

Caudate

CAUDATE - Expression summary

Protein expression

h
m
l
n

RNA expression

GTEx:10.0RPKM
FANTOM5:31.1Tags Per Million

CAUDATE - Annotated protein expression

Annotated protein
expression

Glial cells:Not detected
Neuronal cells:Not detected
 

Antibody staining

Antibody HPA058574

 

Antibody CAB000141

 

Antibody CAB018580

 

Glial cells

Not detected   Not detected   Low  

Neuronal cells

Not detected   Not detected   Low  
     
     
     

CAUDATE - HPA RNA-seq

Pending HPA RNA-seq analysis


CAUDATE - GTEx RNA-seq

Average RPKM

10.0

GTEx sample id

RPKM

 

Brain - Caudate (basal ganglia)

Brain - Caudate (basal ganglia)
RPKM: 10.0
Samples: 117

Max RPKM: 18.3
Min RPKM: 4.2
Std RPKM: 2.4
Median RPKM: 10
GTEX-XMD1-0011-R5A-SM-4AT47 18.3
GTEX-NPJ8-0011-R5a-SM-2HMJY 16.9
GTEX-13OW6-0011-R5a-SM-5O9BK 15.7
GTEX-12WSB-0011-R5b-SM-5GU67 15.0
GTEX-13SLW-0011-R5b-SM-5SI6Z 15.0
GTEX-12WSA-0011-R5b-SM-5GU5I 14.4
GTEX-11GSP-0011-R5a-SM-57WBE 13.8
GTEX-T2IS-0011-R5A-SM-32QP4 13.5
GTEX-P44H-0011-R5A-SM-2XCEX 13.2
GTEX-11H98-0011-R5b-SM-57WCF 13.1
GTEX-144GO-0011-R5a-SM-5PNUR 13.0
GTEX-WHSE-0011-R5A-SM-3P5ZO 12.9
GTEX-QVJO-0011-R5A-SM-2S1QM 12.8
GTEX-139TS-0011-R5b-SM-5J2MZ 12.4
GTEX-13JUV-0011-R5a-SM-5LZY5 12.4
GTEX-Y8DK-0011-R5B-SM-4RTW6 12.3
GTEX-ZAB4-0011-R5a-SM-4SOKC 12.3
GTEX-13FLV-0011-R5a-SM-5LZWT 12.2
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 12.1
GTEX-13G51-0011-R5a-SM-5L3EB 12.1
GTEX-NL4W-0011-R5a-SM-2I3GD 12.1
GTEX-13FHO-0011-R5b-SM-5LZZ3 12.0
GTEX-13X6I-0011-R5a-SM-5PNWW 12.0
GTEX-PWO3-0011-R5A-SM-2I5EZ 12.0
GTEX-131YS-0011-R5b-SM-5K7YB 11.9
GTEX-13JVG-0011-R5a-SM-5MR4O 11.9
GTEX-13N1W-0011-R5b-SM-5MR5Q 11.9
GTEX-PVOW-0011-R5A-SM-32PL7 11.9
GTEX-S7SE-0011-R5A-SM-2XCDA 11.9
GTEX-X261-0011-R5A-SM-3NMB4 11.9
GTEX-13OVJ-0011-R5a-SM-5P9H7 11.8
GTEX-Q2AG-0011-R5A-SM-2HMJH 11.6
GTEX-WVLH-0011-R5A-SM-3MJFW 11.6
GTEX-ZE7O-0011-R5a-SM-57WBO 11.3
GTEX-11WQC-0011-R5a-SM-5BC74 11.0
GTEX-145LS-0011-R5a-SM-5SI65 10.9
GTEX-RU72-0011-R5A-SM-2TF6U 10.9
GTEX-WZTO-0011-R5B-SM-3NMC5 10.9
GTEX-1445S-0011-R5a-SM-5PNUS 10.8
GTEX-OHPN-0011-R5A-SM-2I5FF 10.8
GTEX-139TT-0011-R5b-SM-5K7W8 10.7
GTEX-14BIM-0011-R5b-SM-5S2RM 10.7
GTEX-N7MT-0011-R5a-SM-2I3G6 10.7
GTEX-T6MN-0011-R5A-SM-32QPD 10.7
GTEX-ZVZQ-0011-R5b-SM-57WDC 10.7
GTEX-R55E-0011-R5A-SM-2TC5N 10.6
GTEX-132Q8-0011-R5a-SM-5IJDM 10.5
GTEX-NL3H-0011-R5a-SM-2I3GB 10.5
GTEX-X4XX-0011-R5A-SM-46MWN 10.5
GTEX-12ZZY-0011-R5a-SM-5EGL9 10.4
GTEX-13OVL-0011-R5b-SM-5L3FU 10.4
GTEX-UTHO-0011-R5A-SM-3GIJD 10.4
GTEX-13PLJ-0011-R5a-SM-5O9BG 10.3
GTEX-1399T-0011-R5b-SM-5IJDK 10.1
GTEX-13CIG-0011-R5b-SM-5L3F2 10.1
GTEX-12ZZX-0011-R5a-SM-5HL89 10.0
GTEX-13NYS-0011-R5a-SM-5MR4D 10.0
GTEX-WWYW-0011-R5A-SM-3NB3E 10.0
GTEX-ZXG5-0011-R5b-SM-57WBN 10.0
GTEX-12WSM-0011-R5a-SM-5EQ4Y 9.9
GTEX-OXRN-0011-R5A-SM-2I5EF 9.9
GTEX-ZE9C-0011-R5a-SM-5EGLO 9.8
GTEX-12WSD-0011-R5b-SM-5CVNG 9.7
GTEX-YFC4-0011-R5a-SM-4RGLR 9.7
GTEX-13O3Q-0011-R5b-SM-5P9H4 9.6
GTEX-N7MS-0011-R5a-SM-2HMK8 9.6
GTEX-13OW5-0011-R5b-SM-5L3FR 9.5
GTEX-13RTJ-0011-R5a-SM-5P9HR 9.5
GTEX-13X6J-0011-R5b-SM-5PNWT 9.4
GTEX-13CZV-0011-R5a-SM-5K7XA 9.2
GTEX-ZV68-0011-R5a-SM-4YCDW 9.2
GTEX-11OF3-0011-R5a-SM-57WB4 9.0
GTEX-14ABY-0011-R5b-SM-5SI7B 9.0
GTEX-ZUA1-0011-R5b-SM-51MTG 9.0
GTEX-13FXS-0011-R5b-SM-5LZYE 8.9
GTEX-12WSC-0011-R5b-SM-5CVNS 8.8
GTEX-13OW7-0011-R5b-SM-5O9DM 8.8
GTEX-13OW8-0011-R5b-SM-5L3FQ 8.8
GTEX-13VXU-0011-R5a-SM-5O9D7 8.7
GTEX-13X6K-0011-R5b-SM-5PNUE 8.7
GTEX-14BIN-0011-R5b-SM-5SI78 8.7
GTEX-QMR6-0011-R5A-SM-32PKT 8.7
GTEX-12ZZW-0011-R5a-SM-5DUVN 8.6
GTEX-139T8-0011-R5b-SM-5J1MO 8.5
GTEX-ZVT3-0011-R5a-SM-51MSI 8.5
GTEX-13S7M-0011-R5b-SM-5P9HS 8.4
GTEX-13SLX-0011-R5a-SM-5O9BV 8.2
GTEX-11UD1-0011-R5b-SM-5P9FP 8.1
GTEX-13FLW-0011-R5a-SM-5LZX6 8.1
GTEX-13NYB-0011-R5a-SM-5MR45 8.1
GTEX-13OVH-0011-R5b-SM-5KM4L 8.1
GTEX-145MH-0011-R5a-SM-5P9JT 8.0
GTEX-RVPV-0011-R5A-SM-2TF69 7.7
GTEX-X585-0011-R5A-SM-46MVI 7.7
GTEX-ZF28-0011-R5a-SM-4WWCZ 7.7
GTEX-S7PM-0011-R5A-SM-3NM8G 7.6
GTEX-1313W-0011-R5b-SM-5L3EP 7.5
GTEX-13PVQ-0011-R5b-SM-5O9DI 7.5
GTEX-NPJ7-0011-R5a-SM-33HBK 7.5
GTEX-13112-0011-R5b-SM-5DUV8 7.4
GTEX-TSE9-0011-R5A-SM-3DB7J 7.4
GTEX-RVPU-0011-R5A-SM-2XCAD 7.3
GTEX-11NV4-0011-R5a-SM-5NQ88 7.2
GTEX-13CF2-0011-R5a-SM-5LZWS 7.1
GTEX-XOTO-0011-R5A-SM-4B657 7.0
GTEX-Z93S-0011-R5b-SM-4RGNI 7.0
GTEX-144GL-0011-R5b-SM-5PNUJ 6.7
GTEX-WL46-0011-R5A-SM-3LK6V 6.7
GTEX-12WSH-0011-R5b-SM-5P9F3 6.6
GTEX-13O3O-0011-R5b-SM-5KM44 6.6
GTEX-12WSF-0011-R5a-SM-5HL8K 6.5
GTEX-T5JC-0011-R5A-SM-32PLK 6.4
GTEX-1477Z-0011-R5b-SM-5PNUO 6.2
GTEX-145MG-0011-R5b-SM-5S2VU 5.9
GTEX-13FHP-0011-R5b-SM-5LZY2 5.7
GTEX-YJ89-0011-R5a-SM-4V6GM 5.6
GTEX-13NZA-0011-R5b-SM-5KM4K 4.2
Show all

CAUDATE - FANTOM5 CAGE

Average Tags Per Million

31.1

FANTOM5 sample id

Sample description

Tags Per Million

Caudate nucleus
Tags Per Million: 31.1
FF:10164-103B2 76 years, female 33.9
FF:10379-105H1 89 years, female 28.2

Contact

  • BLOG
  • PRESS ROOM
  • contact@proteinatlas.org

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS
  • DOWNLOADABLE DATA

The Human Protein Atlas

  • ANTIBODY AVAILABILITY
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.