Tissue expression of ODF3 - Summary - The Human Protein Atlas

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ODF3

TISSUE

CELL

CANCER

TISSUE ATLAS PRIMARY DATA

GENE/PROTEIN

Antibody validation

Dictionary


Tissue proteome

GENERAL INFORMATION
Gene name	ODF3
Gene description	Outer dense fiber of sperm tails 3
Protein class	Predicted intracellular proteins
Predicted localization	Intracellular
Number of transcripts	3
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HUMAN PROTEIN ATLAS INFORMATION

RNA tissue category

HPA:	Tissue enriched (testis)
GTEx:	Tissue enriched (testis)

Protein evidence

Evidence at protein level

Protein expression

Cytoplasmic expression in several cell types including sperm flagella.

DATA RELIABILITY
Data reliability description	Presumed off target binding observed and disregarded. Pending external verification.
Reliability score	Uncertain based on 2 antibodies. HPA038919 , HPA039241
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RNA AND PROTEIN EXPRESSION SUMMARY

RNA expression (TPM)

Protein expression (score)

Brain

Cerebral cortex

Hippocampus

N/A

Caudate

N/A

Cerebellum

N/A

Endocrine tissues

Thyroid gland

Parathyroid gland

Adrenal gland

Bone marrow & immune system

Appendix

Bone marrow

Lymph node

Tonsil

Spleen

Muscle tissues

Heart muscle

Skeletal muscle

Smooth muscle

Lung

Nasopharynx

N/A

Bronchus

N/A

N/A

Lung

Liver & gallbladder

Liver

Gallbladder

Pancreas

Pancreas

Gastrointestinal tract

Oral mucosa

N/A

Salivary gland

Esophagus

Stomach

Duodenum

Small intestine

Colon

Rectum

Kidney & urinary bladder

Kidney

Urinary bladder

Male tissues

Testis

Epididymis

Prostate

Seminal vesicle

Female tissues

Breast

Vagina

N/A

Cervix, uterine

Endometrium

Fallopian tube

Ovary

Placenta

Adipose & soft tissue

Adipose tissue

Soft tissue

N/A

Skin

Skin

Cerebral cortex

PROTEIN EXPRESSION OVERVIEW
Organ Expression Alphabetical

RNA EXPRESSION OVERVIEW
HPA dataset Organ Expression Alphabetical RNA tissue category: Tissue enriched (testis)
GTEx dataset Organ Expression Alphabetical RNA tissue category: Tissue enriched (testis)

GENE INFORMATION
Gene name	ODF3 (HGNC Symbol)
Synonyms	CT135, hSHIPPO, SHIPPO1
Description	Outer dense fiber of sperm tails 3 (HGNC Symbol)
Entrez gene summary	ODF3 is a component of sperm flagella outer dense fibers, which add stiffness, elastic recoil, and protection against shearing forces during sperm movement.[supplied by OMIM, Apr 2004]
Chromosome	11
Cytoband	p15.5
Chromosome location (bp)	196738 - 200261
Protein evidence	Evidence at protein level (all genes)
Ensembl	ENSG00000177947 (version 83.38)
Entrez gene	113746
UniProt	Q96PU9 (UniProt - Evidence at transcript level)
neXtProt	NX_Q96PU9
Antibodypedia	ODF3 antibodies

PROTEIN BROWSER

ODF3-001	ODF3-004	ODF3-201

PROTEIN INFORMATION
Splice variant	UniProt	Protein class	Gene ontology	Length & mass	Signal peptide (predicted)	Transmembrane regions (predicted)
ODF3-001 ENSP00000325868 ENST00000325113	Q96PU9 [Direct mapping] Outer dense fiber protein 3 Show all	Predicted intracellular proteins Protein evidence (Kim et al 2014) Show all	GO:0001520 [outer dense fiber] GO:0007275 [multicellular organismal development] GO:0007283 [spermatogenesis] GO:0030154 [cell differentiation] Show all	254 aa 27.7 kDa	No	0
ODF3-004 ENSP00000436588 ENST00000525282	Q96PU9 [Direct mapping] Outer dense fiber protein 3 Show all	Predicted intracellular proteins Show all	GO:0007275 [multicellular organismal development] GO:0007283 [spermatogenesis] GO:0030154 [cell differentiation] Show all	207 aa 22.7 kDa	No	0
ODF3-201 ENSP00000339623 ENST00000342593	F8W6Z3 [Direct mapping] Outer dense fiber protein 3 Show all	Predicted intracellular proteins Show all		127 aa 14 kDa	No	0

Contact

contact@proteinatlas.org

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.