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Field

Term
Gene name

Class

Subclass

Chromosome

External id

In atlas

Reliability

Reliability

Reliability

Validation

Method

Validation

Method

Validation

Method

Validation

Location

Searches

Tissue

Cell type

Expression

Tissue

Specificity

Cell line

Specificity

Tissue

Detectable

Cell line

Detectable

Category

Score

Score

Score

Antibodies

Column

 
 
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TISSUE ATLAS PRIMARY DATA
MOUSE BRAIN

GENE/PROTEIN

Antibody validation


Dictionary


Tissue proteome

GENERAL INFORMATION

Gene name

CALB2

Gene description

Calbindin 2

Protein class

Plasma proteins
Predicted intracellular proteins

Predicted localization

Intracellular

Number of transcripts

4
SHOW MORE

HUMAN PROTEIN ATLAS INFORMATION

RNA tissue category

HPA:Tissue enhanced (adipose tissue, testis)
GTEx:Tissue enhanced (hypothalamus, cerebellum)
FANTOM5:Tissue enhanced (adipose tissue, cerebellum)

Protein evidence

Evidence at protein level

Protein expression

Cytoplasmic expression in a subset of tissues including, adipose tissue, CNS, fallopian tube, endocrine pancreas and Leydig cells.

DATA RELIABILITY

Data reliability
description

Antibody staining mainly consistent with RNA expression data. Pending external verification.

Reliability score

Supported based on 3 antibodies.
HPA007305 , HPA007306 , CAB000106
SHOW MORE

RNA AND PROTEIN EXPRESSION SUMMARY

RNA expression (TPM) Protein expression (score)
Brain
Cerebral cortex
Hippocampus
N/A
Caudate
N/A
Cerebellum
N/A
Endocrine tissues
Thyroid gland
Parathyroid gland
Adrenal gland
Bone marrow & immune system
Appendix
Bone marrow
Lymph node
Tonsil
Spleen
Muscle tissues
Heart muscle
Skeletal muscle
Smooth muscle
Lung
Nasopharynx
N/A
Bronchus
N/A
Lung
Liver & gallbladder
Liver
Gallbladder
Pancreas
Pancreas
Gastrointestinal tract
Oral mucosa
N/A
Salivary gland
Esophagus
Stomach
Duodenum
Small intestine
Colon
Rectum
Kidney & urinary bladder
Kidney
Urinary bladder
Male tissues
Testis
Epididymis
Prostate
Seminal vesicle
Female tissues
Breast
Vagina
N/A
Cervix, uterine
Endometrium
Fallopian tube
Ovary
Placenta
Adipose & soft tissue
Adipose tissue
Soft tissue
N/A
Skin
Skin
Cerebral cortex

Lymph node

Liver

Colon

Kidney

Testis

Soft tissue

PROTEIN EXPRESSION OVERVIEW

Organ
Expression
Alphabetical

RNA EXPRESSION OVERVIEW

HPA dataset
Organ
Expression
Alphabetical
RNA tissue category: Tissue enhanced (adipose tissue, testis)
GTEx dataset
Organ
Expression
Alphabetical
RNA tissue category: Tissue enhanced (hypothalamus, cerebellum)
FANTOM5 dataset
Organ
Expression
Alphabetical
RNA tissue category: Tissue enhanced (adipose tissue, cerebellum)

GENE INFORMATION

Gene name

CALB2 (HGNC Symbol)

Synonyms

CAL2

Description

Calbindin 2 (HGNC Symbol)

Entrez gene summary

This gene encodes an intracellular calcium-binding protein belonging to the troponin C superfamily. Members of this protein family have six EF-hand domains which bind calcium. This protein plays a role in diverse cellular functions, including message targeting and intracellular calcium buffering. It also functions as a modulator of neuronal excitability, and is a diagnostic marker for some human diseases, including Hirschsprung disease and some cancers. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Jun 2010]

Chromosome

16

Cytoband

q22.2

Chromosome location (bp)

71358713 - 71390438

Protein evidence

Evidence at protein level (all genes)

Ensembl

ENSG00000172137 (version 83.38)

Entrez gene

794

UniProt

P22676 (UniProt - Evidence at transcript level)

neXtProt

NX_P22676

Antibodypedia

CALB2 antibodies

PROTEIN BROWSER

CALB2-001
CALB2-003
CALB2-006
CALB2-201

PROTEIN INFORMATION

Splice variant

UniProt

Protein class

Gene ontology

Length & mass

Signal peptide
(predicted)

Transmembrane regions
(predicted)

CALB2-001
ENSP00000307508
ENST00000302628
P22676 [Direct mapping]
Calretinin
Show all
Predicted intracellular proteins
Plasma proteins
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005509 [calcium ion binding]
GO:0005634 [nucleus]
GO:0005737 [cytoplasm]
GO:0005829 [cytosol]
GO:0005921 [gap junction]
GO:0043005 [neuron projection]
GO:0043195 [terminal bouton]
GO:0045202 [synapse]
GO:0051480 [cytosolic calcium ion homeostasis]
Show all
271 aa
31.5 kDa
No 0
CALB2-003
ENSP00000454467
ENST00000490520
H3BMN5 [Direct mapping]
Calretinin
Show all
Predicted intracellular proteins
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005509 [calcium ion binding]
Show all
158 aa
18.4 kDa
No 0
CALB2-006
ENSP00000454639
ENST00000562305
H3BN14 [Direct mapping]
Calretinin
Show all
Predicted intracellular proteins
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005509 [calcium ion binding]
Show all
235 aa
27.2 kDa
No 0
CALB2-201
ENSP00000340294
ENST00000349553
A6NER6 [Direct mapping]
Calbindin 2, 29kDa (Calretinin), isoform CRA_b; Calretinin
Show all
Predicted intracellular proteins
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005509 [calcium ion binding]
GO:0005737 [cytoplasm]
Show all
192 aa
22.2 kDa
No 0

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