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TISSUE ATLAS PRIMARY DATA CEREBRAL CORTEX
MOUSE BRAIN

GENE/PROTEIN

Antibody validation


Dictionary

Cerebral cortex

Tissue proteome

Brain
Extended brain samples

CEREBRAL CORTEX - Expression summary

Protein expression

h
m
l
n

RNA expression

HPA:12.5TPM
GTEx:22.4RPKM

CEREBRAL CORTEX - Annotated protein expression

Annotated protein
expression

Endothelial cells:Not detected
Glial cells:Medium
Neuronal cells:High
Neuropil:Medium
 

Antibody staining

Antibody HPA007305

 

Antibody HPA007306

 

Antibody CAB000106

 

Endothelial cells

Not detected   Not detected   Not detected  

Glial cells

Medium   Low   Not detected  

Neuronal cells

Medium   Medium   Low  

Neuropil

Medium   Medium   Not detected  
     
     
     

CEREBRAL CORTEX - HPA RNA-seq

Average TPM

12.5

N/A Male, age 5
Sample 1
TPM: 14.5
overview Female, age 40
Sample 2
TPM: 3.7
Cell types%
Neuronal cells: 35
Glial cells and endothelial cells: 65
overview Male, age 70
Sample 3
TPM: 19.4
Cell types%
Neuronal cells: 35
Glial cells and endothelial cells: 65

CEREBRAL CORTEX - GTEx RNA-seq

Average RPKM

22.4

GTEx sample id

RPKM

 

Brain - Cortex

Brain - Cortex
RPKM: 24.9
Samples: 114

Max RPKM: 140.5
Min RPKM: 1.4
Std RPKM: 18.7
Median RPKM: 21.7
GTEX-11OF3-2926-SM-5HL78 140.5
GTEX-13FXS-3126-SM-5J2NN 80.7
GTEX-13X6K-2926-SM-5Q5D5 76.9
GTEX-ZE7O-3126-SM-5HL5X 76.7
GTEX-11NUK-2926-SM-5A5MD 57.1
GTEX-13QIC-2926-SM-5J2NF 55.6
GTEX-QVJO-1426-SM-2S1QY 51.4
GTEX-144GL-3026-SM-5Q5CW 51.3
GTEX-Y111-2726-SM-4TT3N 48.7
GTEX-131YS-3126-SM-5KLYT 45.0
GTEX-145MG-3026-SM-5RQJA 44.4
GTEX-13NYC-2826-SM-5K7WR 44.0
GTEX-ZAK1-3026-SM-5S2MJ 41.6
GTEX-13S7M-3126-SM-5RQJQ 41.5
GTEX-117XS-3026-SM-5N9CA 39.8
GTEX-11EI6-3026-SM-5GZZO 38.3
GTEX-131XW-3126-SM-5LZUC 37.1
GTEX-T2IS-3026-SM-32QPM 37.1
GTEX-12WSC-3026-SM-5GCNF 36.5
GTEX-X4XX-3026-SM-3NMB2 34.6
GTEX-YJ89-3026-SM-5IFJI 34.6
GTEX-RU72-3026-SM-5SI7Y 34.5
GTEX-R55F-1326-SM-5S2V4 34.2
GTEX-11PRG-2926-SM-5987A 33.9
GTEX-ZUA1-3026-SM-59HJC 33.9
GTEX-11EMC-3226-SM-5EGKW 33.8
GTEX-14BMV-3026-SM-5S2PQ 32.9
GTEX-WZTO-2926-SM-3NM9I 32.2
GTEX-12126-1026-SM-5P9JJ 31.3
GTEX-Z93S-2926-SM-57WB9 31.3
GTEX-12WSD-3126-SM-5HL7P 31.0
GTEX-11GSO-2926-SM-5HL73 30.8
GTEX-14A5I-2926-SM-5Q5CQ 30.6
GTEX-RNOR-2326-SM-2TF4I 30.2
GTEX-12WSH-3026-SM-5CVNI 29.3
GTEX-ZVT3-3026-SM-5E43N 28.4
GTEX-ZYFD-3026-SM-5E44C 28.3
GTEX-Y8DK-0826-SM-4TT3T 27.7
GTEX-13JUV-2926-SM-5LZX7 27.4
GTEX-12ZZZ-3026-SM-5BC67 27.2
GTEX-11DXW-1126-SM-5H12Q 26.8
GTEX-145MH-3026-SM-5Q5DZ 26.8
GTEX-1128S-2726-SM-5H12C 26.6
GTEX-Q2AG-2926-SM-2HMJ3 26.6
GTEX-12ZZY-3026-SM-5GCOU 26.2
GTEX-PVOW-2526-SM-2XCF7 26.2
GTEX-WVLH-3026-SM-3MJG9 26.2
GTEX-ZZPT-3026-SM-5GZXH 26.1
GTEX-XLM4-3026-SM-4AT6L 25.1
GTEX-139T8-1026-SM-5J2MC 25.0
GTEX-TSE9-3026-SM-3DB76 24.5
GTEX-1192X-3126-SM-5N9BY 23.8
GTEX-11OC5-0726-SM-5P9JK 23.7
GTEX-11NV4-2126-SM-5N9DS 23.6
GTEX-14ASI-3026-SM-5S2PN 23.4
GTEX-13O3Q-2926-SM-5KM45 22.5
GTEX-12ZZX-2926-SM-5GCOQ 21.9
GTEX-NPJ7-2726-SM-2I3FT 21.5
GTEX-11ZUS-2926-SM-5FQSL 21.4
GTEX-13PL6-3126-SM-5LUAR 21.4
GTEX-13X6J-3026-SM-5Q5CU 21.4
GTEX-13SLX-3126-SM-5S2Q5 20.1
GTEX-XOTO-3026-SM-4B65M 18.8
GTEX-X585-3026-SM-46MWF 18.3
GTEX-13FHP-3026-SM-5IJBS 18.2
GTEX-T5JC-2426-SM-3NMDB 18.2
GTEX-13OVH-3026-SM-5MR4N 18.0
GTEX-12ZZW-2926-SM-5LZUP 17.9
GTEX-13NYB-3026-SM-5IJD7 17.8
GTEX-13OVJ-2826-SM-5L3GW 17.8
GTEX-T6MN-2626-SM-32PMQ 17.4
GTEX-13NYS-3126-SM-5KLYV 17.2
GTEX-11DXY-3226-SM-5GIDE 17.1
GTEX-1399T-3026-SM-5KLZC 17.1
GTEX-OXRN-2426-SM-2I5EQ 17.1
GTEX-13OW6-3026-SM-5J2MI 16.7
GTEX-QMR6-1426-SM-32PLA 16.7
GTEX-11O72-2926-SM-5BC4V 16.5
GTEX-11ONC-2926-SM-5P9JM 16.5
GTEX-QVUS-2826-SM-3GADB 16.4
GTEX-11GSP-3226-SM-5986O 16.3
GTEX-132Q8-3026-SM-5PNVG 16.3
GTEX-147GR-3026-SM-5S2ML 15.3
GTEX-144FL-3026-SM-5O99C 15.2
GTEX-NPJ8-1526-SM-2D7VU 15.2
GTEX-111FC-3126-SM-5GZZ2 15.0
GTEX-145MF-2726-SM-5O995 13.7
GTEX-WWYW-3126-SM-3NB39 13.6
GTEX-13OW7-3026-SM-5L3GY 12.9
GTEX-13IVO-2926-SM-5L3CZ 12.6
GTEX-WL46-2926-SM-3LK82 10.3
GTEX-13OW8-2826-SM-5L3GC 9.7
GTEX-PWO3-0926-SM-2I5EY 9.7
GTEX-13VXU-2926-SM-5LU5C 9.3
GTEX-UTHO-3026-SM-3GAFB 8.7
GTEX-11WQK-3026-SM-5EQL6 8.6
GTEX-1313W-3126-SM-5LZUI 8.5
GTEX-13JVG-3126-SM-5L3FH 8.4
GTEX-YFC4-3126-SM-5PNV6 8.4
GTEX-13PVQ-3026-SM-5SI93 8.2
GTEX-11GS4-3126-SM-5A5LH 7.8
GTEX-145LS-3126-SM-5Q5BY 7.8
GTEX-11TTK-2926-SM-5PNYP 7.7
GTEX-QDT8-2926-SM-32PKC 6.3
GTEX-WHSE-3026-SM-3P5ZH 5.4
GTEX-13FHO-3026-SM-5J1O9 4.2
GTEX-1117F-3226-SM-5N9CT 4.0
GTEX-13O3O-3126-SM-5KM3H 3.9
GTEX-ZAJG-3126-SM-5HL9J 3.3
GTEX-13FLW-1426-SM-5K7YE 2.9
GTEX-1445S-3026-SM-5O9BR 2.5
GTEX-N7MT-1126-SM-5SI7V 2.4
GTEX-13G51-3026-SM-5IJB8 1.7
GTEX-12WSA-2926-SM-5EQ4D 1.4
Show all
 

Brain - Frontal Cortex (BA9)

Brain - Frontal Cortex (BA9)
RPKM: 19.8
Samples: 108

Max RPKM: 87.2
Min RPKM: 1.1
Std RPKM: 12.3
Median RPKM: 18.1
GTEX-12ZZY-0011-R10b-SM-5HL7W 87.2
GTEX-Z93S-0011-R10a-SM-4RGNM 45.9
GTEX-12126-0011-R10b-SM-5BC6T 45.7
GTEX-13OW6-0011-R10a-SM-5L3HE 38.4
GTEX-NL4W-0011-R10A-SM-2I3DY 37.9
GTEX-14ASI-0011-R10b-SM-5S2VZ 37.8
GTEX-ZVT3-0011-R10b-SM-57WB6 37.3
GTEX-YJ89-0011-R10a-SM-4SOK9 35.7
GTEX-14BIN-0011-R10a-SM-5S2UA 35.3
GTEX-13FXS-0011-R10a-SM-5J2MA 34.7
GTEX-13JUV-0011-R10b-SM-5LZXR 34.1
GTEX-11WQC-0011-R10a-SM-57WCT 33.2
GTEX-131YS-0011-R10b-SM-5EQ5N 32.8
GTEX-13X6J-0011-R10b-SM-5PNWA 32.3
GTEX-11ZUS-0011-R10b-SM-5BC79 31.6
GTEX-13O3Q-0011-R10b-SM-5KM39 31.6
GTEX-N7MS-0011-R10A-SM-2HMJK 30.7
GTEX-12WSF-0011-R10a-SM-5LZVH 30.0
GTEX-ZUA1-0011-R10a-SM-51MT6 30.0
GTEX-TSE9-0011-R10A-SM-3DB7O 29.4
GTEX-12WSM-0011-R10a-SM-5DUWV 29.3
GTEX-13NZA-0011-R10b-SM-5KM54 28.7
GTEX-12ZZZ-0011-R10a-SM-5P9HC 28.2
GTEX-QMR6-0011-R10A-SM-32PKO 27.8
GTEX-13QIC-0011-R10a-SM-5O9C7 27.6
GTEX-12WSH-0011-R10a-SM-5LZUS 27.1
GTEX-13FLV-0011-R10b-SM-5LZZ2 27.0
GTEX-XLM4-0011-R10A-SM-4AT5P 26.9
GTEX-13OW7-0011-R10a-SM-5L3H3 26.8
GTEX-139TS-0011-R10a-SM-5K7TU 26.5
GTEX-13SLX-0011-R10a-SM-5P9HV 26.5
GTEX-T5JC-0011-R10A-SM-32PM2 26.4
GTEX-145LU-0011-R10a-SM-5PNWJ 26.0
GTEX-Q2AG-0011-R10A-SM-2HMLA 25.8
GTEX-P44H-0011-R10A-SM-2XCEK 25.3
GTEX-1313W-0011-R10b-SM-5DUXA 24.2
GTEX-X4XX-0011-R10B-SM-46MWO 24.1
GTEX-13OVJ-0011-R10b-SM-5L3HT 23.6
GTEX-S7SE-0011-R10A-SM-2XCDF 23.5
GTEX-WL46-0011-R10A-SM-3MJFQ 23.5
GTEX-145MG-0011-R10a-SM-5PNWG 23.0
GTEX-147GR-0011-R10b-SM-5S2UM 22.6
GTEX-NPJ7-0011-R10A-SM-2I3E5 22.5
GTEX-13G51-0011-R10b-SM-5LZYF 22.1
GTEX-13NYB-0011-R10a-SM-5KM43 22.0
GTEX-12WSC-0011-R10a-SM-5GU57 21.9
GTEX-13NYS-0011-R10a-SM-5MR4S 21.9
GTEX-12ZZX-0011-R10b-SM-5DUWK 21.8
GTEX-Y8DK-0011-R10A-SM-4SOK1 21.8
GTEX-12WSD-0011-R10b-SM-5GU79 21.6
GTEX-11H98-0011-R10b-SM-5NQ98 20.3
GTEX-13FTZ-0011-R10b-SM-5KLZS 18.9
GTEX-OXRO-0011-R10A-SM-2I5EH 18.6
GTEX-13X6K-0011-R10a-SM-5P9JR 18.3
GTEX-131XH-0011-R10a-SM-5EGLJ 18.0
GTEX-13OW8-0011-R10a-SM-5L3H6 17.9
GTEX-ZF28-0011-R10a-SM-4WWEH 17.9
GTEX-N7MT-0011-R10A-SM-2I3E1 17.8
GTEX-OXRN-0011-R10A-SM-2I5GC 17.5
GTEX-T6MN-0011-R10A-SM-32QP7 17.3
GTEX-12WSE-0011-R10b-SM-5P9JV 17.1
GTEX-WZTO-0011-R10B-SM-4E3KB 17.0
GTEX-13N2G-0011-R10a-SM-5MR34 16.9
GTEX-X585-0011-R10A-SM-46MUY 16.3
GTEX-14BIL-0011-R10a-SM-5SI75 16.0
GTEX-NPJ8-0011-R10A-SM-2YUMO 15.8
GTEX-NL3H-0011-R10A-SM-2I3E9 15.7
GTEX-13OVL-0011-R10a-SM-5L3GS 15.6
GTEX-13N1W-0011-R10b-SM-5MR4H 15.1
GTEX-13S7M-0011-R10b-SM-5PNZB 15.1
GTEX-13FLW-0011-R10b-SM-5LZZF 14.7
GTEX-11WQK-0011-R10a-SM-5BC6R 13.6
GTEX-ZDXO-0011-R10a-SM-4WWD8 13.6
GTEX-QVUS-0011-R10A-SM-3GIK3 13.5
GTEX-147F4-0011-R10b-SM-5S2WC 13.2
GTEX-11GSP-0011-R10a-SM-5NQ7J 12.9
GTEX-QVJO-0011-R10A-SM-2S1QJ 12.8
GTEX-ZAB4-0011-R10a-SM-4SOKH 12.0
GTEX-145LS-0011-R10a-SM-5PNUQ 11.9
GTEX-ZXG5-0011-R10a-SM-57WDD 11.9
GTEX-13IVO-0011-R10a-SM-5LZY3 11.3
GTEX-13FHO-0011-R10b-SM-5J2MM 10.2
GTEX-ZV68-0011-R10a-SM-51MT7 9.7
GTEX-ZVZQ-0011-R10b-SM-51MRT 9.7
GTEX-WVLH-0011-R10A-SM-3MJFM 9.2
GTEX-14753-0011-R10b-SM-5S2WE 8.6
GTEX-1477Z-0011-R10b-SM-5S2RF 8.0
GTEX-X4EP-0011-R10B-SM-4QASJ 7.7
GTEX-YFC4-0011-R10a-SM-4SOK5 7.5
GTEX-145MH-0011-R10b-SM-5PNUK 7.2
GTEX-13O3O-0011-R10a-SM-5LUA9 6.9
GTEX-13SLW-0011-R10a-SM-5S2UI 6.8
GTEX-132Q8-0011-R10b-SM-5DUWZ 6.6
GTEX-131XW-0011-R10a-SM-5DUVA 6.4
GTEX-X261-0011-R10B-SM-4E3JT 5.7
GTEX-RVPU-0011-R10A-SM-2XCAH 5.6
GTEX-12ZZW-0011-R10b-SM-5HL9X 5.4
GTEX-WWYW-0011-R10A-SM-3NB35 5.1
GTEX-QDT8-0011-R10A-SM-32PKG 4.7
GTEX-13RTJ-0011-R10b-SM-5O9CW 4.4
GTEX-1445S-0011-R10a-SM-5PNWB 4.4
GTEX-13CZV-0011-R10b-SM-5LZYD 4.3
GTEX-13X6I-0011-R10a-SM-5PNWI 4.1
GTEX-13JVG-0011-R10b-SM-5KM2P 2.2
GTEX-13QJC-0011-R10a-SM-5SI63 1.8
GTEX-ZE7O-0011-R10a-SM-57WAZ 1.4
GTEX-12WSA-0011-R10b-SM-5P9ET 1.3
GTEX-XMD1-0011-R10A-SM-4AT4A 1.1
Show all

CEREBRAL CORTEX - FANTOM5 CAGE

No Fantom CAGE analysis found for this gene / tissue

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